Co-expression analysis

Gene ID	PtpAffx.204936.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g46690: UDP-glucoronosyl/UDP-glucosyl transferase family protein (HF=7e-7)
Module size	23 genes
NF	0.14
%ile	26.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.88	97.7	0.82	PtpAffx.204936.1.S1_at	pmrna9772	hypothetical protein	-	7e-7	At3g46690	UDP-glucoronosyl/UDP-glucosyl transferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.92	PtpAffx.209305.1.S1_at	pmrna18391	hypothetical protein	-	2e+0	At3g01390	VMA10 (VACUOLAR MEMBRANE ATPASE 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.91	PtpAffx.152074.1.S1_s_at	CF236322	hypothetical protein	-	3e-42	At3g58490	phosphatidic acid phosphatase family protein / PAP2 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.95	PtpAffx.141946.1.S1_s_at	CN518150	hypothetical protein	-	2e-23	At2g22370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.95	Ptp.5635.1.S1_s_at	BU809496	hypothetical protein	-	1e-4	At2g46170	reticulon family protein (RTNLB5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	PtpAffx.45196.1.S1_at	CV229115	hypothetical protein	-	5e-9	At4g28300	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.91	PtpAffx.204724.1.S1_x_at	pmrna9308	hypothetical protein	-	8e-22	At2g14835	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	PtpAffx.12458.1.S1_at	CV226822	-	-	2e-8	At5g20650	COPT5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.96	Ptp.6025.1.S1_at	CA826170	hypothetical protein	-	3e-33	At4g05590	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.93	PtpAffx.25457.2.S1_at	CF119695	hypothetical protein	-	1e-22	At4g17486	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	PtpAffx.31580.1.A1_at	CV229866	hypothetical protein	-	2e-2	At3g50720	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.88	PtpAffx.201727.1.S1_at	pmrna3431	hypothetical protein	-	2e-2	At1g05420	OFP12 (OVATE FAMILY PROTEIN 12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.92	PtpAffx.43937.1.S1_s_at	BP926853	hypothetical protein	-	9e-1	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.91	Ptp.24.1.S1_s_at	CV237044	hypothetical protein	-	2e-36	At5g64130	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.89	PtpAffx.213815.1.S1_at	pmrna26963	hypothetical protein	-	7e-2	At1g33590	disease resistance protein-related / LRR protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.85	PtpAffx.223503.1.S1_s_at	pmrna41542	potassium channel /// hypothetical protein	-	3e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	0.93	Ptp.3117.1.A1_s_at	CV261729	hypothetical protein	-	5e-16	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.09	14.6	0.90	Ptp.3648.1.S1_at	CK319090	hypothetical protein	-	3e-3	At3g14067	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.89	PtpAffx.40515.1.A1_at	DN492251	hypothetical protein	-	8e-12	At5g25830	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.90	PtpAffx.70003.1.A1_at	CV235506	hypothetical protein	-	7e-2	At1g69210	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.91	Ptp.4839.1.S1_s_at	BU882730	hypothetical protein	-	3e-1	At1g24450	NFD2 (NUCLEAR FUSION DEFECTIVE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.87	PtpAffx.207718.1.S1_at	pmrna15335	hypothetical protein	-	1e-105	At1g74260	PUR4 (purine biosynthesis 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.87	PtpAffx.3076.1.S1_at	CV228815	hypothetical protein	-	1e-5	At1g54790	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.6	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
3.1	93.2	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.3	89.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage