Co-expression analysis

Gene ID	PtpAffx.204788.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g38300: DNA binding / transcription factor (HF=3e-22)
Module size	29 genes
NF	0.24
%ile	43.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	97.1	0.83	PtpAffx.204788.1.S1_at	pmrna9436	hypothetical protein	-	3e-22	At2g38300	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.27960.1.S1_at	CV240521	hypothetical protein	-	9e-2	At1g70780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.91	Ptp.5821.1.S1_at	CV240646	glutathione peroxidase	-	6e-28	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.85	PtpAffx.36879.1.A1_at	CV275101	hypothetical protein	-	2e-1	At3g49120	PRXCB (PEROXIDASE CB)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.94	PtpAffx.10087.1.A1_at	CV259549	hypothetical protein	-	1e-13	At2g36310	URH1 (URIDINE-RIBOHYDROLASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.89	PtpAffx.207347.1.S1_s_at	pmrna14583	hypothetical protein	-	2e-1	At1g52315	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.90	PtpAffx.51795.1.S1_at	BU896390	hypothetical protein	-	1e-17	At5g66870	ASL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.92	PtpAffx.224432.1.S1_x_at	pmrna42954	hypothetical protein	-	4e-126	At2g16280	KCS9 (3-KETOACYL-COA SYNTHASE 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.92	PtpAffx.41585.1.S1_at	CX660062	precursor of transferase serine hydroxymethyltransferase 3	-	0	At5g26780	SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	0.95	Ptp.2518.1.S1_at	CV274235	hypothetical protein	-	1e-58	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.89	PtpAffx.205547.1.S1_at	pmrna10972	hypothetical protein	-	4e-22	At1g77410	BGAL16 (beta-galactosidase 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.92	PtpAffx.11615.1.A1_at	CV259125	hypothetical protein	-	3e-11	At3g58190	LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.2518.1.S1_x_at	CV274235	hypothetical protein	-	1e-58	At3g52930	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.5844.1.S1_at	CX174548	hypothetical protein	-	9e-5	At1g68680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.86	PtpAffx.79840.1.S1_at	CK090827	hypothetical protein	-	4e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.90	PtpAffx.208129.1.S1_at	pmrna16143	hypothetical protein	-	3e-2	At5g28288	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.91	PtpAffx.36261.2.S1_at	CX183660	hypothetical protein	-	3e-2	At1g60800	NIK3 (NSP-INTERACTING KINASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.20	34.6	0.94	Ptp.3867.1.S1_s_at	CV243174	hypothetical protein	-	1e-97	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.92	Ptp.2685.1.S1_at	CK113401	hypothetical protein	-	5e-6	At4g23885	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.96	PtpAffx.11859.5.A1_a_at	CV249708	hypothetical protein	-	2e-11	At4g26210	mitochondrial ATP synthase g subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.91	PtpAffx.111048.1.S1_at	BU883776	hypothetical protein	-	2e-94	At2g22480	PFK5 (PHOSPHOFRUCTOKINASE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	Ptp.2301.1.A1_at	CV237242	-	-	2e-21	At3g02360	6-phosphogluconate dehydrogenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	0.94	PtpAffx.153669.1.A1_s_at	CV247741	hypothetical protein	-	1e-12	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.92	PtpAffx.137458.1.S1_at	CV258197	hypothetical protein	-	2e-18	At1g67600	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.89	PtpAffx.212372.1.S1_at	pmrna24246	hypothetical protein	-	3e-25	At1g72000	beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.94	Ptp.2312.1.A1_at	CA928446	hypothetical protein	-	7e-62	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.96	PtpAffx.51742.1.S1_at	CV243886	hypothetical protein	-	7e-45	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.88	Ptp.6789.1.S1_at	DN489117	hypothetical protein	-	5e+0	At5g61770	PPAN (PETER PAN-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	0.87	PtpAffx.211059.1.S1_at	pmrna21722	hypothetical protein	-	1e-19	At5g17980	C2 domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.1	93.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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