CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.204743.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g46030: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.52

%ile 82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.67 91.1 0.92 PtpAffx.217345.1.S1_s_at pmrna32563 hypothetical protein - 2e-9 At4g22030 F-box family protein O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.33 57.5 0.93 PtpAffx.22638.1.S1_at DN503417 hypothetical protein - 4e-1 At5g52870 unknown protein O.I. H.G. S.X.
0.22 38.3 0.92 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1609773_at, orthologous to the query gene, PtpAffx.204743.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 93.6 1609773_at At5g46030 hypothetical protein LOC100261732 - 1e+0 At3g11600 unknown protein O.I. H.G. S.X.
0.50 72.7 1621845_s_at At5g46030 hypothetical protein LOC100261121 - 1e-13 At4g29350 PFN2 (PROFILIN 2) O.I. H.G. S.X.
0.50 72.7 1614753_at At5g46030 hypothetical protein LOC100241307 - 2e-4 At2g43090 aconitase C-terminal domain-containing protein O.I. H.G. S.X.
0.47 67.7 1611204_s_at At5g46030 hypothetical protein LOC100251977 - 1e-32 At2g29960 CYP5 (CYCLOPHILIN 5) O.I. H.G. S.X.
0.44 64.1 1620288_s_at At5g46030 hypothetical protein LOC100243939 - 8e-18 At1g65970 TPX2 (thioredoxin-dependent peroxidase 2) O.I. H.G. S.X.
0.36 50.7 1609322_at At5g46030 hypothetical protein LOC100244359 - 2e-32 At3g03070 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.25 30.5 1619551_at At5g46030 hypothetical protein LOC100260697 - 9e-12 At4g08520 clathrin adaptor complex small chain family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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