Co-expression analysis

Gene ID	PtpAffx.204743.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g46030: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.52
%ile	82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.92	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.217345.1.S1_s_at	pmrna32563	hypothetical protein	-	2e-9	At4g22030	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.95	PtpAffx.202093.1.S1_s_at	pmrna4169	hypothetical protein	-	6e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.93	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.22638.1.S1_at	DN503417	hypothetical protein	-	4e-1	At5g52870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.92	PtpAffx.144812.1.S1_at	DN500920	hypothetical protein	-	1e+0	At3g04630	WDL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	99.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.75176.1.S1_at, orthologous to the query gene, PtpAffx.204743.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	GmaAffx.75176.1.S1_at	At5g46030	-	-	2e-20	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.80	91.5	GmaAffx.91307.1.S1_s_at	At5g46030	-	-	8e-23	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.5892.1.S1_at	At5g46030	-	-	3e-15	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.11262.1.S1_at	At5g46030	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.11262.1.S1_x_at	At5g46030	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.21	26.6	Gma.5626.1.S1_s_at	At5g46030	-	-	4e-41	At5g27770	60S ribosomal protein L22 (RPL22C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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