CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.204743.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g46030: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.52

%ile 82.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 0.92 PtpAffx.204743.1.S1_at pmrna9337 hypothetical protein - 3e-1 At5g46030 unknown protein O.I. H.G. S.X.
0.67 91.1 0.92 PtpAffx.217345.1.S1_s_at pmrna32563 hypothetical protein - 2e-9 At4g22030 F-box family protein O.I. H.G. S.X.
0.50 78.6 0.95 PtpAffx.202093.1.S1_s_at pmrna4169 hypothetical protein - 6e-2 At1g10370 ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9) O.I. H.G. S.X.
0.40 67.0 0.93 PtpAffx.205723.1.S1_x_at pmrna11295 hypothetical protein - 2e-5 At3g22930 calmodulin, putative O.I. H.G. S.X.
0.33 57.5 0.93 PtpAffx.22638.1.S1_at DN503417 hypothetical protein - 4e-1 At5g52870 unknown protein O.I. H.G. S.X.
0.22 38.3 0.92 PtpAffx.144812.1.S1_at DN500920 hypothetical protein - 1e+0 At3g04630 WDL1 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	99.2	0.92	PtpAffx.204743.1.S1_at	pmrna9337	hypothetical protein	-	3e-1	At5g46030	unknown protein	O.I.	H.G.	S.X.
0.67	91.1	0.92	PtpAffx.217345.1.S1_s_at	pmrna32563	hypothetical protein	-	2e-9	At4g22030	F-box family protein	O.I.	H.G.	S.X.
0.50	78.6	0.95	PtpAffx.202093.1.S1_s_at	pmrna4169	hypothetical protein	-	6e-2	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.205723.1.S1_x_at	pmrna11295	hypothetical protein	-	2e-5	At3g22930	calmodulin, putative	O.I.	H.G.	S.X.
0.33	57.5	0.93	PtpAffx.22638.1.S1_at	DN503417	hypothetical protein	-	4e-1	At5g52870	unknown protein	O.I.	H.G.	S.X.
0.22	38.3	0.92	PtpAffx.144812.1.S1_at	DN500920	hypothetical protein	-	1e+0	At3g04630	WDL1	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.4 99.0 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
4.0 95.3 GSM362889 Clone1979_LPI5_N-_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7 94.7 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.2 93.5 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM362883 Clone1979_LPI2_N+_4w_rep1 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7 91.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
10.4	99.0	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.7	94.7	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM362883	Clone1979_LPI2_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.7	91.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g46030, orthologous to the query gene, PtpAffx.204743.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.58 73.8 At5g46030 834644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. H.G. S.X.
0.53 68.6 At2g38130 818391 ATMAK3 Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. O.I. H.G. S.X.
0.49 63.5 At5g53560 835438 CB5-E (CYTOCHROME B5 ISOFORM E) Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase. O.I. H.G. S.X.
0.44 57.2 At1g27530 839644 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. H.G. S.X.
0.43 55.3 At1g26550 839195 peptidyl-prolyl cis-trans isomerase PPIC-type family protein F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA O.I. H.G. S.X.
0.42 53.9 At1g10590 837601 DNA-binding protein-related F:nucleic acid binding;P:biological_process unknown;C:plasma membrane;PAO O.I. H.G. S.X.
0.40 50.8 At3g51100 824274 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.37 45.0 At2g44525 819060 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFP O.I. H.G. S.X.
0.36 43.6 At3g03100 821104 NADH:ubiquinone oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:unknown;C:mitochondrion, respiratory chain complex I;OBMFP O.I. H.G. S.X.
0.35 41.6 At3g18430 821372 calcium-binding EF hand family protein F:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFB O.I. H.G. S.X.
0.32 35.7 At1g04750 839419 VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721) vesicle-associated membrane protein 7B (At VAMP7B) mRNA, O.I. H.G. S.X.
0.31 33.8 At5g51510 835225 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.30 32.1 At5g58740 835988 nuclear movement family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF O.I. H.G. S.X.
0.28 30.3 At1g16890 838260 ubiquitin-conjugating enzyme, putative UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro. O.I. H.G. S.X.
0.26 24.4 At2g01060 814630 myb family transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POB O.I. H.G. S.X.
0.25 22.6 At1g20575 838646 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative F:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPV O.I. H.G. S.X.
0.23 19.3 At1g61150 842408 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. H.G. S.X.
0.22 17.5 At2g25280 817066 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP O.I. H.G. S.X.
0.22 17.5 At2g17390 816246 AKR2B (ANKYRIN REPEAT-CONTAINING 2B) Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. O.I. H.G. S.X.
0.20 14.4 At4g37830 829939 cytochrome c oxidase-related F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO O.I. H.G. S.X.
0.19 12.7 At4g34700 829622 complex 1 family protein / LVR family protein F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO O.I. H.G. S.X.
0.19 12.7 At3g15660 820809 GRX4 (GLUTAREDOXIN 4) F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFA O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
0.58	73.8	At5g46030	834644	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	H.G.	S.X.
0.53	68.6	At2g38130	818391	ATMAK3	Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.	O.I.	H.G.	S.X.
0.49	63.5	At5g53560	835438	CB5-E (CYTOCHROME B5 ISOFORM E)	Encodes a cytochrome b5 isoform that can be reduced by AtCBR, a cytochrome b5 reductase.	O.I.	H.G.	S.X.
0.44	57.2	At1g27530	839644	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP	O.I.	H.G.	S.X.
0.43	55.3	At1g26550	839195	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	F:isomerase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA	O.I.	H.G.	S.X.
0.42	53.9	At1g10590	837601	DNA-binding protein-related	F:nucleic acid binding;P:biological_process unknown;C:plasma membrane;PAO	O.I.	H.G.	S.X.
0.40	50.8	At3g51100	824274	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.37	45.0	At2g44525	819060	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BMOFP	O.I.	H.G.	S.X.
0.36	43.6	At3g03100	821104	NADH:ubiquinone oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:unknown;C:mitochondrion, respiratory chain complex I;OBMFP	O.I.	H.G.	S.X.
0.35	41.6	At3g18430	821372	calcium-binding EF hand family protein	F:calcium ion binding;P:N-terminal protein myristoylation;C:vacuole;MPOFB	O.I.	H.G.	S.X.
0.32	35.7	At1g04750	839419	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	vesicle-associated membrane protein 7B (At VAMP7B) mRNA,	O.I.	H.G.	S.X.
0.31	33.8	At5g51510	835225	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.30	32.1	At5g58740	835988	nuclear movement family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPF	O.I.	H.G.	S.X.
0.28	30.3	At1g16890	838260	ubiquitin-conjugating enzyme, putative	UBC36/UBC13B encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair. It can bind to the MMZ/UEV1 proteins in vitro.	O.I.	H.G.	S.X.
0.26	24.4	At2g01060	814630	myb family transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;POB	O.I.	H.G.	S.X.
0.25	22.6	At1g20575	838646	dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative	F:elongation factor-2 kinase activity, dolichyl-phosphate beta-D-mannosyltransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum;BOAMFPV	O.I.	H.G.	S.X.
0.23	19.3	At1g61150	842408	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	H.G.	S.X.
0.22	17.5	At2g25280	817066	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BAMOFP	O.I.	H.G.	S.X.
0.22	17.5	At2g17390	816246	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.	O.I.	H.G.	S.X.
0.20	14.4	At4g37830	829939	cytochrome c oxidase-related	F:cytochrome-c oxidase activity;P:unknown;C:mitochondrion;MPO	O.I.	H.G.	S.X.
0.19	12.7	At4g34700	829622	complex 1 family protein / LVR family protein	F:catalytic activity;P:photorespiration;C:mitochondrial membrane, plasma membrane, respiratory chain complex I;MFPO	O.I.	H.G.	S.X.
0.19	12.7	At3g15660	820809	GRX4 (GLUTAREDOXIN 4)	F:metal ion binding;P:cell redox homeostasis;C:mitochondrion;OBMPFA	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.204743.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g46030: unknown protein (HF=3e-1)
Module size	6 genes
NF	0.52
%ile	82.4

Co-expression analysis

Gene ID PtpAffx.204743.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At5g46030: unknown protein (HF=3e-1) Module size 6 genes NF 0.52 %ile 82.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.204743.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At5g46030: unknown protein (HF=3e-1)

Module size 6 genes

NF 0.52

%ile 82.4

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays