Co-expression analysis

Gene ID	PtpAffx.204723.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g49910: WD-40 repeat family protein / mitotic checkpoint protein, putative (HF=2e-96)
Module size	16 genes
NF	0.47
%ile	77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	97.4	0.88	PtpAffx.204723.1.S1_x_at	pmrna9307	hypothetical protein	-	2e-96	At1g49910	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.56	83.9	0.91	PtpAffx.202044.1.S1_at	pmrna4069	hypothetical protein	-	3e-15	At5g43080	CYCA3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.54	80.8	0.92	PtpAffx.200049.1.S1_at	pmrna92	DNA methyltransferase	-	2e-8	At1g69770	CMT3 (chromomethylase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.52	79.4	0.92	PtpAffx.209335.1.S1_s_at	pmrna18468	hypothetical protein	-	1e-21	At3g12530	PSF2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.51	78.9	0.92	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.48	75.4	0.92	Ptp.2751.1.S1_at	DN490334	condensin complex components subunit /// condensin complex components subunit	-	1e-87	At3g47460	ATSMC2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.45	72.3	0.93	PtpAffx.134612.1.A1_at	CV229293	hypothetical protein	-	9e-12	At2g30820	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.91	PtpAffx.58805.1.A1_s_at	CK319251	histone H2	-	1e-16	At3g20670	HTA13	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.93	PtpAffx.7322.1.S1_at	CV237479	hypothetical protein	-	8e-38	At5g41880	POLA3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.91	PtpAffx.223278.1.S1_at	pmrna41196	hypothetical protein	-	1e-55	At5g49880	mitotic checkpoint family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.206215.1.S1_at	pmrna12339	hypothetical protein	-	6e-19	At2g45490	AtAUR3 (ATAURORA3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.91	PtpAffx.201253.1.S1_at	pmrna2484	hypothetical protein	-	3e-8	At4g21070	ATBRCA1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	0.91	PtpAffx.13773.2.A1_at	CV274005	hypothetical protein	-	1e+0	At1g62422	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	PtpAffx.44606.1.A1_at	CV225637	hypothetical protein	-	3e-1	At5g50010	transcription factor/ transcription regulator	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	0.93	Ptp.1602.1.S1_at	AY307372.1	hypothetical protein	-	8e-102	At1g20930	CDKB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	98.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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