Co-expression analysis

Gene ID PtpAffx.204723.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g49910: WD-40 repeat family protein / mitotic checkpoint protein, putative (HF=2e-96)
Module size 16 genes
NF 0.47
%ile 77.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8697.40.88PtpAffx.204723.1.S1_x_atpmrna9307hypothetical protein-2e-96At1g49910WD-40 repeat family protein / mitotic checkpoint protein, putativeO.I.H.G.S.X.
0.5683.90.91PtpAffx.202044.1.S1_atpmrna4069hypothetical protein-3e-15At5g43080CYCA3O.I.H.G.S.X.
0.5480.80.92PtpAffx.200049.1.S1_atpmrna92DNA methyltransferase-2e-8At1g69770CMT3 (chromomethylase 3)O.I.H.G.S.X.
0.5279.40.92PtpAffx.209335.1.S1_s_atpmrna18468hypothetical protein-1e-21At3g12530PSF2O.I.H.G.S.X.
0.5178.90.92PtpAffx.18355.1.S1_atCV253470hypothetical protein-2e-1At3g11520CYCB1O.I.H.G.S.X.
0.4875.40.92Ptp.2751.1.S1_atDN490334condensin complex components subunit /// condensin complex components subunit-1e-87At3g47460ATSMC2O.I.H.G.S.X.
0.4572.30.93PtpAffx.134612.1.A1_atCV229293hypothetical protein-9e-12At2g30820unknown proteinO.I.H.G.S.X.
0.4471.90.91PtpAffx.58805.1.A1_s_atCK319251histone H2-1e-16At3g20670HTA13O.I.H.G.S.X.
0.4369.70.92PtpAffx.129961.1.S1_atCV226698hypothetical protein-8e-34At3g25980mitotic spindle checkpoint protein, putative (MAD2)O.I.H.G.S.X.
0.4268.60.93PtpAffx.7322.1.S1_atCV237479hypothetical protein-8e-38At5g41880POLA3O.I.H.G.S.X.
0.4268.60.91PtpAffx.223278.1.S1_atpmrna41196hypothetical protein-1e-55At5g49880mitotic checkpoint family proteinO.I.H.G.S.X.
0.4067.00.92PtpAffx.206215.1.S1_atpmrna12339hypothetical protein-6e-19At2g45490AtAUR3 (ATAURORA3)O.I.H.G.S.X.
0.3661.60.91PtpAffx.201253.1.S1_atpmrna2484hypothetical protein-3e-8At4g21070ATBRCA1O.I.H.G.S.X.
0.3255.20.91PtpAffx.13773.2.A1_atCV274005hypothetical protein-1e+0At1g62422unknown proteinO.I.H.G.S.X.
0.3052.00.93PtpAffx.44606.1.A1_atCV225637hypothetical protein-3e-1At5g50010transcription factor/ transcription regulatorO.I.H.G.S.X.
0.3052.00.93Ptp.1602.1.S1_atAY307372.1hypothetical protein-8e-102At1g20930CDKB2O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.198.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM328275Populus x canescens leaf hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.691.3GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM327406Populus balsamifera_1006_young_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327405Populus balsamifera_1006_young_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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