Co-expression analysis

Gene ID	PtpAffx.204683.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g16940: carbon-sulfur lyase (HF=5e-1)
Module size	9 genes
NF	0.16
%ile	31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.84	97.1	0.77	PtpAffx.204683.1.S1_at	pmrna9224	hypothetical protein	-	5e-1	At5g16940	carbon-sulfur lyase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	0.81	PtpAffx.105308.1.S1_at	BU823102	hypothetical protein	-	2e-1	At3g48660	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.80	PtpAffx.217671.1.S1_at	pmrna33028	hypothetical protein	-	6e+0	At5g43185	Expressed protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.83	PtpAffx.220779.1.S1_s_at	pmrna37210	hypothetical protein	-	7e+0	At5g09230	SRT2 (SIRTUIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.14	23.5	0.83	PtpAffx.99537.1.S1_at	DN500501	-	-	2e-1	At5g27541	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.82	PtpAffx.209541.1.S1_at	pmrna18906	hypothetical protein	-	8e-2	At4g28270	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.83	PtpAffx.211948.1.S1_at	pmrna23459	hypothetical protein	-	6e-1	At2g29045	LCR62 (Low-molecular-weight cysteine-rich 62)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.81	PtpAffx.202268.1.S1_at	pmrna4541	cytochrome P450	-	2e-23	At1g01280	CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.78	PtpAffx.215967.1.S1_at	pmrna30457	hypothetical protein	-	3e-3	At3g25520	ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.5	98.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
6.0	97.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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