Co-expression analysis

Gene ID PtpAffx.204683.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At5g16940: carbon-sulfur lyase (HF=5e-1)
Module size 9 genes
NF 0.16
%ile 31.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8497.10.77PtpAffx.204683.1.S1_atpmrna9224hypothetical protein-5e-1At5g16940carbon-sulfur lyaseO.I.H.G.S.X.
0.2850.50.81PtpAffx.105308.1.S1_atBU823102hypothetical protein-2e-1At3g48660unknown proteinO.I.H.G.S.X.
0.1932.70.80PtpAffx.217671.1.S1_atpmrna33028hypothetical protein-6e+0At5g43185Expressed proteinO.I.H.G.S.X.
0.1525.30.83PtpAffx.220779.1.S1_s_atpmrna37210hypothetical protein-7e+0At5g09230SRT2 (SIRTUIN 2)O.I.H.G.S.X.
0.1423.50.83PtpAffx.99537.1.S1_atDN500501--2e-1At5g27541-O.I.H.G.S.X.
0.1219.60.82PtpAffx.209541.1.S1_atpmrna18906hypothetical protein-8e-2At4g28270zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1219.60.83PtpAffx.211948.1.S1_atpmrna23459hypothetical protein-6e-1At2g29045LCR62 (Low-molecular-weight cysteine-rich 62)O.I.H.G.S.X.
0.1118.10.81PtpAffx.202268.1.S1_atpmrna4541cytochrome P450-2e-23At1g01280CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2)O.I.H.G.S.X.
0.0711.60.78PtpAffx.215967.1.S1_atpmrna30457hypothetical protein-3e-3At3g25520ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.598.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.097.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328066Populus x canescens leaf control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM372096Clone3200_LPI5_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.289.3GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372095Clone3200_LPI5_N-_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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