Co-expression analysis

Gene ID	PtpAffx.204565.1.S1_at
Gene name	SAUR family protein
Homology with Arabidopsis	Similar to At3g03850: auxin-responsive protein, putative (HF=5e-1)
Module size	6 genes
NF	0.42
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.84	PtpAffx.204565.1.S1_at	pmrna8960	SAUR family protein	-	5e-1	At3g03850	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.85	PtpAffx.224029.1.S1_x_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.86	PtpAffx.209763.1.S1_at	pmrna19260	hypothetical protein	-	3e+0	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.219441.1.S1_x_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.85	PtpAffx.95500.1.A1_at	CV243681	-	-	1e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.87	PtpAffx.124431.1.A1_at	CV264645	-	-	2e+0	At5g35510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1606566_at, orthologous to the query gene, PtpAffx.204565.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	1606566_at	At3g03850	hypothetical protein LOC100252008	-	1e-12	At4g38840	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1611639_at	At3g03850	-	-	4e+0	At4g05590	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1619157_at	At3g03850	inward rectifying shaker-like K+ channel	-	3e-66	At4g18290	KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618563_at	At3g03850	hypothetical protein LOC100267134	-	3e-7	At2g41040	methyltransferase-related	O.I.	H.G.	S.X.	Please select
0.39	54.9	1622209_at	At3g03850	hypothetical protein LOC100254328	-	6e-39	At2g26580	YAB5 (YABBY5)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1620398_at	At3g03850	hypothetical LOC100263767	-	1e-3	At3g09690	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1619741_at	At3g03850	hypothetical protein LOC100259693	-	4e-50	At4g14550	IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1622682_at	At3g03850	hypothetical protein LOC100256501	-	2e-67	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1612382_at	At3g03850	-	-	2e-1	At3g57870	SCE1 (SUMO CONJUGATION ENZYME 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1607463_at	At3g03850	hypothetical protein LOC100255717	-	1e-12	At3g12203	scpl17 (serine carboxypeptidase-like 17)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1610957_at	At3g03850	hypothetical protein LOC100241474	-	4e+0	At4g09320	NDPK1	O.I.	H.G.	S.X.	Please select
0.12	12.1	1615434_at	At3g03850	hypothetical protein LOC100257403	-	1e+0	At5g04620	ATBIOF (BIOTIN F)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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