Co-expression analysis

Gene ID	PtpAffx.204565.1.S1_at
Gene name	SAUR family protein
Homology with Arabidopsis	Similar to At3g03850: auxin-responsive protein, putative (HF=5e-1)
Module size	6 genes
NF	0.42
%ile	70.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.84	PtpAffx.204565.1.S1_at	pmrna8960	SAUR family protein	-	5e-1	At3g03850	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.85	PtpAffx.224029.1.S1_x_at	pmrna42263	hypothetical protein	-	1e+0	At5g41520	40S ribosomal protein S10 (RPS10B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.42	68.6	0.86	PtpAffx.209763.1.S1_at	pmrna19260	hypothetical protein	-	3e+0	At5g48945	LCR46 (Low-molecular-weight cysteine-rich 46)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.88	PtpAffx.219441.1.S1_x_at	pmrna35362	cc-nbs-lrr resistance protein	-	1e-1	At5g45210	disease resistance protein (TIR-NBS-LRR class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.85	PtpAffx.95500.1.A1_at	CV243681	-	-	1e+0	At5g38140	NF-YC12 (NUCLEAR FACTOR Y, SUBUNIT C12)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.87	PtpAffx.124431.1.A1_at	CV264645	-	-	2e+0	At5g35510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	99.4	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
7.6	98.3	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.9	92.5	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.9	92.5	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, HW09P09u_s_at, orthologous to the query gene, PtpAffx.204565.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	HW09P09u_s_at	At3g03850	-	-	4e+0	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig18943_at	At3g03850	-	-	4e-1	At5g48680	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig23962_at	At3g03850	-	-	1e+1	At5g40860	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	HW09I11u_s_at	At3g03850	aquaporin	-	2e+0	At2g33509	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	HV_CEb0011G04r2_at	At3g03850	-	-	6e+0	At3g01250	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	1.1	Contig6430_s_at	At3g03850	-	-	3e-4	At5g43430	ETFBETA	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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