Co-expression analysis

Gene ID	PtpAffx.204436.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g24000: Bet v I allergen family protein (HF=7e-1)
Module size	9 genes
NF	0.19
%ile	36.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	71.9	0.79	PtpAffx.204436.1.S1_at	pmrna8713	hypothetical protein	-	7e-1	At1g24000	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	0.83	PtpAffx.218672.1.S1_at	pmrna34376	hypothetical protein	-	3e-1	At1g66380	MYB114 (myb domain protein 114)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.84	PtpAffx.204515.1.S1_at	pmrna8859	hypothetical protein	-	2e-1	At4g01850	SAM-2 (S-ADENOSYLMETHIONINE SYNTHETASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	0.84	PtpAffx.204943.1.S1_at	pmrna9782	hypothetical protein	-	3e-7	At5g59130	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.84	PtpAffx.67703.1.S1_at	BU871250	-	-	1e-1	At3g54925	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.84	PtpAffx.8131.8.S1_at	CV270594	-	-	2e-1	At3g58150	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	0.84	PtpAffx.217202.1.S1_at	pmrna32369	hypothetical protein	-	1e-2	At3g60260	phagocytosis and cell motility protein ELMO1-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.82	PtpAffx.37786.1.A1_at	CV239459	-	-	4e+0	At5g14800	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.11	18.1	0.84	PtpAffx.200027.1.S1_at	pmrna46	hypothetical protein	-	9e-1	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM362885	Clone1979_LPI2_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.3	89.8	GSM372092	Clone3200_LPI2_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.1	88.6	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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