CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.204430.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g44050: kinesin motor protein-related (HF=2e-160)

Module size 7 genes

NF 0.60

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 67.0 0.94 PtpAffx.204430.1.S1_at pmrna8705 hypothetical protein - 2e-160 At3g44050 kinesin motor protein-related O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.129961.1.S1_at CV226698 hypothetical protein - 8e-34 At3g25980 mitotic spindle checkpoint protein, putative (MAD2) O.I. H.G. S.X.
0.67 91.1 0.96 PtpAffx.127433.1.A1_at CV257930 cyclin b - 5e-3 At3g11520 CYCB1 O.I. H.G. S.X.
0.61 87.0 0.94 PtpAffx.18355.1.S1_at CV253470 hypothetical protein - 2e-1 At3g11520 CYCB1 O.I. H.G. S.X.
0.55 82.2 0.95 PtpAffx.56737.2.A1_a_at CX174790 hypothetical protein - 3e-41 At4g33260 CDC20.2 O.I. H.G. S.X.
0.50 78.6 0.93 Ptp.1602.1.S1_at AY307372.1 hypothetical protein - 8e-102 At1g20930 CDKB2 O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.134612.1.A1_at CV229293 hypothetical protein - 9e-12 At2g30820 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.40	67.0	0.94	PtpAffx.204430.1.S1_at	pmrna8705	hypothetical protein	-	2e-160	At3g44050	kinesin motor protein-related	O.I.	H.G.	S.X.
0.73	93.6	0.94	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.
0.67	91.1	0.96	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	O.I.	H.G.	S.X.
0.61	87.0	0.94	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.
0.55	82.2	0.95	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	O.I.	H.G.	S.X.
0.50	78.6	0.93	Ptp.1602.1.S1_at	AY307372.1	hypothetical protein	-	8e-102	At1g20930	CDKB2	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.134612.1.A1_at	CV229293	hypothetical protein	-	9e-12	At2g30820	unknown protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.89	PtpAffx.208774.1.S1_s_at	pmrna17391	hypothetical protein	-	6e-7	At1g05440	unknown protein	O.I.	H.G.	S.X.
0.55	82.2	0.92	PtpAffx.13773.2.A1_at	CV274005	hypothetical protein	-	1e+0	At1g62422	unknown protein	O.I.	H.G.	S.X.
0.50	78.6	0.92	Ptp.2751.1.S1_at	DN490334	condensin complex components subunit /// condensin complex components subunit	-	1e-87	At3g47460	ATSMC2	O.I.	H.G.	S.X.
0.50	78.6	0.92	PtpAffx.160224.1.A1_s_at	CV242019	hypothetical protein	-	2e+0	At4g10100	CNX7	O.I.	H.G.	S.X.
0.50	78.6	0.94	PtpAffx.212217.1.S1_at	pmrna23950	hypothetical protein	-	8e-47	At1g54385	binding	O.I.	H.G.	S.X.
0.47	74.6	0.93	Ptp.4665.1.A1_s_at	CV268985	hypothetical protein	-	8e-34	At1g44110	CYCA1	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.86793.1.A1_at	CV269476	-	-	2e-3	At5g37010	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.93	PtpAffx.2072.2.A1_at	CK091188	hypothetical protein	-	1e+0	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.
0.44	71.9	0.81	PtpAffx.206569.1.S1_at	pmrna13032	hypothetical protein	-	7e-1	At2g36030	unknown protein	O.I.	H.G.	S.X.
0.41	67.7	0.89	PtpAffx.42005.1.A1_s_at	DN489536	hypothetical protein	-	1e+0	At1g63280	serpin-related / serine protease inhibitor-related	O.I.	H.G.	S.X.
0.40	67.0	0.90	Ptp.4180.1.A1_a_at	CV271588	-	-	6e-6	At3g20260	structural constituent of ribosome	O.I.	H.G.	S.X.
0.40	67.0	0.90	PtpAffx.204723.1.S1_x_at	pmrna9307	hypothetical protein	-	2e-96	At1g49910	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.
0.40	67.0	0.91	PtpAffx.2203.2.A1_at	CV257157	tubulin, beta chain	-	1e-106	At5g62700	TUB3	O.I.	H.G.	S.X.
0.40	67.0	0.92	PtpAffx.202625.1.S1_at	pmrna5245	hypothetical protein	-	4e-66	At3g23670	KINESIN-12B	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.200078.1.S1_at	pmrna140	hypothetical protein	-	4e-14	At1g16070	AtTLP8 (TUBBY LIKE PROTEIN 8)	O.I.	H.G.	S.X.
0.40	67.0	0.93	PtpAffx.206215.1.S1_at	pmrna12339	hypothetical protein	-	6e-19	At2g45490	AtAUR3 (ATAURORA3)	O.I.	H.G.	S.X.
0.38	63.7	0.92	PtpAffx.209751.1.S1_at	pmrna19244	hypothetical protein	-	5e-37	At4g21270	ATK1 (ARABIDOPSIS THALIANA KINESIN 1)	O.I.	H.G.	S.X.
0.38	63.7	0.93	PtpAffx.223359.1.S1_at	pmrna41315	hypothetical protein	-	8e-8	At3g03130	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.86	PtpAffx.200397.1.S1_s_at	pmrna800	hypothetical protein	-	2e-4	At5g52870	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.93	PtpAffx.202355.1.S1_at	pmrna4728	hypothetical protein	-	2e-135	At1g02730	ATCSLD5	O.I.	H.G.	S.X.
0.36	61.6	0.94	PtpAffx.206227.1.S1_at	pmrna12360	hypothetical protein	-	6e-68	At2g37420	kinesin motor protein-related	O.I.	H.G.	S.X.
0.36	61.6	0.92	Ptp.2116.1.A1_at	CV234640	-	-	2e-21	At5g59870	HTA6	O.I.	H.G.	S.X.
0.35	59.7	0.91	PtpAffx.44525.1.A1_at	CV228923	hypothetical protein	-	1e+0	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.
0.34	58.3	0.92	Ptp.6641.1.S1_s_at	CV253874	hypothetical protein	-	1e-7	At2g25060	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.87	PtpAffx.205711.1.S1_at	pmrna11277	hypothetical protein	-	8e-7	At3g63300	phosphoinositide binding	O.I.	H.G.	S.X.
0.33	57.5	0.88	PtpAffx.206623.1.S1_at	pmrna13151	hypothetical protein	-	9e-17	At2g45700	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.
0.33	57.5	0.90	PtpAffx.219070.1.S1_at	pmrna34876	hypothetical protein	-	8e-40	At5g60930	chromosome-associated kinesin, putative	O.I.	H.G.	S.X.
0.33	57.5	0.95	Ptp.5646.1.S1_s_at	CX169047	hypothetical protein	-	4e-7	At3g02640	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.94	Ptp.6857.1.S1_s_at	BU833205	hypothetical protein	-	6e-9	At1g20590	cyclin, putative	O.I.	H.G.	S.X.
0.32	55.2	0.92	PtpAffx.146048.1.A1_at	CX177282	hypothetical protein	-	1e+0	At5g42957	unknown protein	O.I.	H.G.	S.X.
0.32	55.2	0.91	PtpAffx.202044.1.S1_at	pmrna4069	hypothetical protein	-	3e-15	At5g43080	CYCA3	O.I.	H.G.	S.X.
0.31	53.7	0.88	PtpAffx.140928.1.A1_at	CV239658	GH3 family protein /// GH3 family protein	-	6e-6	At1g28130	GH3.17	O.I.	H.G.	S.X.
0.31	53.7	0.92	PtpAffx.21767.3.A1_at	CV256188	hypothetical protein	-	3e-5	At4g15140	unknown protein	O.I.	H.G.	S.X.
0.30	52.0	0.90	PtpAffx.203455.1.S1_at	pmrna6882	hypothetical protein	-	4e-14	At4g13690	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.89	PtpAffx.4892.1.S1_a_at	CV270247	hypothetical protein	-	1e-2	At4g21500	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.92	PtpAffx.982.1.A1_at	CV258294	hypothetical protein	-	2e+0	At3g11050	ATFER2 (ferritin 2)	O.I.	H.G.	S.X.
0.29	50.5	0.93	PtpAffx.44301.1.A1_s_at	CV237484	hypothetical protein	-	3e-5	At3g02640	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.91	PtpAffx.44055.1.S1_at	CV256464	hypothetical protein	-	2e+0	At4g26840	SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)	O.I.	H.G.	S.X.
0.27	47.1	0.92	Ptp.7546.1.S1_s_at	CK092366	hypothetical protein	-	1e-1	At1g10940	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	O.I.	H.G.	S.X.
0.26	45.2	0.92	PtpAffx.37407.1.A1_at	CV253704	-	-	2e+0	At5g56050	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8 96.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
7.7	98.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.204430.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g44050: kinesin motor protein-related (HF=2e-160)
Module size	7 genes
NF	0.60
%ile	90.5

Co-expression analysis

Gene ID PtpAffx.204430.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g44050: kinesin motor protein-related (HF=2e-160) Module size 7 genes NF 0.60 %ile 90.5

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.204430.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g44050: kinesin motor protein-related (HF=2e-160)

Module size 7 genes

NF 0.60

%ile 90.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays