CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.204430.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g44050: kinesin motor protein-related (HF=2e-160)

Module size 7 genes

NF 0.60

%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.40 67.0 0.94 PtpAffx.204430.1.S1_at pmrna8705 hypothetical protein - 2e-160 At3g44050 kinesin motor protein-related O.I. H.G. S.X.
0.73 93.6 0.94 PtpAffx.129961.1.S1_at CV226698 hypothetical protein - 8e-34 At3g25980 mitotic spindle checkpoint protein, putative (MAD2) O.I. H.G. S.X.
0.67 91.1 0.96 PtpAffx.127433.1.A1_at CV257930 cyclin b - 5e-3 At3g11520 CYCB1 O.I. H.G. S.X.
0.61 87.0 0.94 PtpAffx.18355.1.S1_at CV253470 hypothetical protein - 2e-1 At3g11520 CYCB1 O.I. H.G. S.X.
0.55 82.2 0.95 PtpAffx.56737.2.A1_a_at CX174790 hypothetical protein - 3e-41 At4g33260 CDC20.2 O.I. H.G. S.X.
0.50 78.6 0.93 Ptp.1602.1.S1_at AY307372.1 hypothetical protein - 8e-102 At1g20930 CDKB2 O.I. H.G. S.X.
0.50 78.6 0.94 PtpAffx.134612.1.A1_at CV229293 hypothetical protein - 9e-12 At2g30820 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.7 98.3 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6 97.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8 96.4 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.7 94.7 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328483 Populus x canescens root control_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328105 Populus x canescens leaf hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.9 87.2 GSM328285 Populus x canescens root control_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the maize gene, Zm.10807.1.S1_at, orthologous to the query gene, PtpAffx.204430.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 55.7 Zm.10807.1.S1_at At3g44050 hypothetical protein LOC100280257 - 4e-19 At3g16060 kinesin motor family protein O.I. H.G. S.X.
0.77 92.1 Zm.1531.1.A1_at At3g44050 hypothetical protein LOC100191913 - 2e+1 At5g54940 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.77 92.1 Zm.18561.1.A1_at At3g44050 hypothetical protein LOC100193602 - 1e-1 At5g04660 CYP77A4 O.I. H.G. S.X.
0.73 89.9 ZmAffx.262.1.A1_s_at At3g44050 acidic ribosomal protein P3 - 3e+0 At4g27410 RD26 (RESPONSIVE TO DESICCATION 26) O.I. H.G. S.X.
0.55 71.6 Zm.13966.2.S1_a_at At3g44050 hypothetical protein LOC100274039 - 4e+0 At4g29930 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.46 58.4 ZmAffx.507.1.A1_at At3g44050 - - 2e-1 At3g14220 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.36 41.3 Zm.16377.1.A1_at At3g44050 - - 2e+0 At3g20555 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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