Co-expression analysis

Gene ID	PtpAffx.204430.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g44050: kinesin motor protein-related (HF=2e-160)
Module size	7 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	67.0	0.94	PtpAffx.204430.1.S1_at	pmrna8705	hypothetical protein	-	2e-160	At3g44050	kinesin motor protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.1602.1.S1_at	AY307372.1	hypothetical protein	-	8e-102	At1g20930	CDKB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.134612.1.A1_at	CV229293	hypothetical protein	-	9e-12	At2g30820	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.93272.1.S1_at, orthologous to the query gene, PtpAffx.204430.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.93272.1.S1_at	At3g44050	-	-	4e+0	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.30997.1.S1_s_at	At3g44050	-	-	2e+0	At5g63090	LOB (LATERAL ORGAN BOUNDARIES)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.90026.1.S1_at	At3g44050	-	-	3e-1	At3g20830	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.115939.2.S1_at	At3g44050	-	-	7e-2	At1g30800	-	O.I.	H.G.	S.X.	Please select
0.18	21.0	TaAffx.112158.1.S1_at	At3g44050	-	-	2e+1	At3g28590	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.78861.1.S1_at	At3g44050	-	-	1e+1	At3g28070	nodulin MtN21 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Vitis_vinifera

Zea_mays

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