Co-expression analysis

Gene ID	PtpAffx.204430.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g44050: kinesin motor protein-related (HF=2e-160)
Module size	7 genes
NF	0.60
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	67.0	0.94	PtpAffx.204430.1.S1_at	pmrna8705	hypothetical protein	-	2e-160	At3g44050	kinesin motor protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.94	PtpAffx.129961.1.S1_at	CV226698	hypothetical protein	-	8e-34	At3g25980	mitotic spindle checkpoint protein, putative (MAD2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.96	PtpAffx.127433.1.A1_at	CV257930	cyclin b	-	5e-3	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.94	PtpAffx.18355.1.S1_at	CV253470	hypothetical protein	-	2e-1	At3g11520	CYCB1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	0.95	PtpAffx.56737.2.A1_a_at	CX174790	hypothetical protein	-	3e-41	At4g33260	CDC20.2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.93	Ptp.1602.1.S1_at	AY307372.1	hypothetical protein	-	8e-102	At1g20930	CDKB2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.94	PtpAffx.134612.1.A1_at	CV229293	hypothetical protein	-	9e-12	At2g30820	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	98.3	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
6.6	97.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.8	96.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.9	87.2	GSM328285	Populus x canescens root control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the barley gene, rbags16h12_s_at, orthologous to the query gene, PtpAffx.204430.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.95	99.2	rbags16h12_s_at	At3g44050	-	-	9e-1	At2g04066	MATE efflux protein-related	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig17479_at	At3g44050	-	-	8e-2	At3g43432	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	rbaal21g04_s_at	At3g44050	-	-	6e+0	At3g43480	-	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig14094_at	At3g44050	-	-	1e+0	At5g55135	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig11458_at	At3g44050	-	-	6e-1	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig13941_at	At3g44050	-	-	6e+0	At5g37900	seven in absentia (SINA) family protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig14007_at	At3g44050	-	-	2e-1	At2g17780	MCA2 (mid1-complementing activity 2)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig10272_at	At3g44050	-	-	8e-13	At1g22040	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig16003_at	At3g44050	-	-	4e-1	At4g09260	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig8096_at	At3g44050	-	-	4e-8	At1g71500	Rieske (2Fe-2S) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig20199_at	At3g44050	-	-	4e+0	At3g16670	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig6858_at	At3g44050	-	-	9e-7	At5g07720	galactosyl transferase GMA12/MNN10 family protein	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig2899_at	At3g44050	-	-	7e-1	At4g36540	BEE2 (BR Enhanced Expression 2)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig561_x_at	At3g44050	-	-	3e-1	At5g38200	hydrolase	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig16025_at	At3g44050	-	-	5e+0	At5g23535	KOW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig13943_s_at	At3g44050	-	-	4e+0	At4g00880	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	rbasd15a18_s_at	At3g44050	-	-	8e-2	At5g64230	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig12805_at	At3g44050	-	-	1e-1	At5g19540	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig7902_at	At3g44050	-	-	3e-15	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig19168_at	At3g44050	-	-	7e+0	At5g48710	ubiquitin-related	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig4864_at	At3g44050	-	-	2e-40	At4g17530	ATRAB1C	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig16870_at	At3g44050	-	-	5e-11	At2g36570	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig1364_at	At3g44050	-	-	4e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig7864_at	At3g44050	-	-	2e+0	At2g24762	AtGDU4 (Arabidopsis thaliana GLUTAMINE DUMPER 4)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig15004_at	At3g44050	-	-	4e-8	At4g25450	ATNAP8	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig3276_s_at	At3g44050	CesA2 protein	-	2e-2	At4g28890	protein binding / ubiquitin-protein ligase/ zinc ion binding	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig22054_at	At3g44050	-	-	8e-2	At2g02440	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig5538_at	At3g44050	-	-	1e-24	At1g30470	SIT4 phosphatase-associated family protein	O.I.	H.G.	S.X.	Please select
0.17	16.9	Contig10925_at	At3g44050	-	-	6e-1	At5g38970	BR6OX1 (BRASSINOSTEROID-6-OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig4157_s_at	At3g44050	-	-	1e-25	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig12013_s_at	At3g44050	-	-	3e+0	At5g38080	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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