Co-expression analysis

Gene ID PtpAffx.204430.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g44050: kinesin motor protein-related (HF=2e-160)
Module size 7 genes
NF 0.60
%ile 90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4067.00.94PtpAffx.204430.1.S1_atpmrna8705hypothetical protein-2e-160At3g44050kinesin motor protein-relatedO.I.H.G.S.X.
0.7393.60.94PtpAffx.129961.1.S1_atCV226698hypothetical protein-8e-34At3g25980mitotic spindle checkpoint protein, putative (MAD2)O.I.H.G.S.X.
0.6791.10.96PtpAffx.127433.1.A1_atCV257930cyclin b-5e-3At3g11520CYCB1O.I.H.G.S.X.
0.6187.00.94PtpAffx.18355.1.S1_atCV253470hypothetical protein-2e-1At3g11520CYCB1O.I.H.G.S.X.
0.5582.20.95PtpAffx.56737.2.A1_a_atCX174790hypothetical protein-3e-41At4g33260CDC20.2O.I.H.G.S.X.
0.5078.60.93Ptp.1602.1.S1_atAY307372.1hypothetical protein-8e-102At1g20930CDKB2O.I.H.G.S.X.
0.5078.60.94PtpAffx.134612.1.A1_atCV229293hypothetical protein-9e-12At2g30820unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.798.3GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
6.697.9GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
4.896.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.794.7GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328105Populus x canescens leaf hypoxia_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328285Populus x canescens root control_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.886.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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