Co-expression analysis

Gene ID PtpAffx.204376.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17220: protein kinase, putative (HF=4e-30)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.90PtpAffx.204376.1.S1_atpmrna8597hypothetical protein-4e-30At2g17220protein kinase, putativeO.I.H.G.S.X.
0.6086.00.93PtpAffx.14376.1.A1_atCV264912hypothetical protein-1e-29At5g26030FC1 (ferrochelatase 1)O.I.H.G.S.X.
0.4067.00.93PtpAffx.46278.1.S1_atCK318821--2e-14At1g28510-O.I.H.G.S.X.
0.3357.50.91PtpAffx.80080.1.S1_atCX181327hypothetical protein-2e-22At2g43320unknown proteinO.I.H.G.S.X.
0.1118.10.93PtpAffx.207740.1.S1_atpmrna15383hypothetical protein-9e-92At3g11320organic anion transmembrane transporterO.I.H.G.S.X.
0.035.20.90PtpAffx.12726.1.S1_atBP925661hypothetical protein-2e+1At5g47080CKB1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.583.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.4140.1.S1_at, orthologous to the query gene, PtpAffx.204376.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.9Zm.4140.1.S1_atAt2g17220hypothetical protein LOC100191980-2e-17At1g69790protein kinase, putativeO.I.H.G.S.X.
0.8194.3Zm.2940.1.A1_atAt2g17220--4e-5At1g56500haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.7792.1Zm.16502.5.A1_atAt2g17220hypothetical protein LOC100280237-1e-12At5g61780tudor domain-containing protein / nuclease family proteinO.I.H.G.S.X.
0.7490.3Zm.15780.1.A1_atAt2g17220--4e+0At3g01472CPuORF33 (Conserved peptide upstream open reading frame 33)O.I.H.G.S.X.
0.7389.9Zm.12152.1.S1_atAt2g17220hypothetical protein LOC100274505-1e-5At1g63120ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)O.I.H.G.S.X.
0.7087.0Zm.8383.1.A1_atAt2g17220PCO062666 protein-4e-1At5g47960ATRABA4CO.I.H.G.S.X.
0.6986.5Zm.1818.1.S1_a_atAt2g17220hypothetical protein LOC100194358-5e+0At5g48545histidine triad family protein / HIT family proteinO.I.H.G.S.X.
0.6582.1Zm.654.1.A1_atAt2g17220hypothetical LOC542071-1e-3At5g35330MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)O.I.H.G.S.X.
0.6582.1Zm.15807.1.A1_atAt2g17220--1e+0At4g19590DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6179.5Zm.9088.1.A1_atAt2g17220--1e+0At2g06908unknown proteinO.I.H.G.S.X.
0.5571.6Zm.12244.2.S1_atAt2g17220--9e-1At5g46940invertase/pectin methylesterase inhibitor family proteinO.I.H.G.S.X.
0.5571.6Zm.15448.1.S1_atAt2g17220plastidic phosphate translocator-like protein1-4e-24At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.4455.7Zm.16892.1.A1_atAt2g17220calmodulin binding protein-2e-2At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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