Co-expression analysis

Gene ID PtpAffx.204376.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g17220: protein kinase, putative (HF=4e-30)
Module size 6 genes
NF 0.12
%ile 24.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4774.60.90PtpAffx.204376.1.S1_atpmrna8597hypothetical protein-4e-30At2g17220protein kinase, putativeO.I.H.G.S.X.
0.6086.00.93PtpAffx.14376.1.A1_atCV264912hypothetical protein-1e-29At5g26030FC1 (ferrochelatase 1)O.I.H.G.S.X.
0.4067.00.93PtpAffx.46278.1.S1_atCK318821--2e-14At1g28510-O.I.H.G.S.X.
0.3357.50.91PtpAffx.80080.1.S1_atCX181327hypothetical protein-2e-22At2g43320unknown proteinO.I.H.G.S.X.
0.1118.10.93PtpAffx.207740.1.S1_atpmrna15383hypothetical protein-9e-92At3g11320organic anion transmembrane transporterO.I.H.G.S.X.
0.035.20.90PtpAffx.12726.1.S1_atBP925661hypothetical protein-2e+1At5g47080CKB1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.596.1GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.894.9GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
3.293.5GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372100Clone3200_LPI5_N+_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM328063Populus x canescens leaf control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM372094Clone3200_LPI5_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
1.583.5GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.583.5GSM327409Populus balsamifera_1006_root_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.482.3GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g17220, orthologous to the query gene, PtpAffx.204376.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.6781.6At2g17220816227protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.H.G.S.X.
0.3541.6At5g48380834892leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.3338.1At2g40270818619protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.H.G.S.X.
0.3338.1At5g04720830350ADR1-L2 (ADR1-like 2)F:protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFAO.I.H.G.S.X.
0.2930.3At5g61210836242SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33)membrane localized t-SNARE SNAP25 homologue, probably involved in cytokinesis and cell plate formationO.I.H.G.S.X.
0.2522.6At3g12740820456ALIS1 (ALA-INTERACTING SUBUNIT 1)Physically interacts with ALA3, and is required for the phospholipid translocase activity of ALA3.O.I.H.G.S.X.
0.2522.6At4g34390829589XLG2 (extra-large GTP-binding protein 2)F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOBO.I.H.G.S.X.
0.1912.7At4g08500826409MEKK1 (MAP KINASE KINASE KINASE 1)Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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