CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.204145.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g01300: protein kinase, putative (HF=5e-97)

Module size 7 genes

NF 0.56

%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 82.2 0.96 PtpAffx.204145.1.S1_s_at pmrna8170 hypothetical protein - 5e-97 At3g01300 protein kinase, putative O.I. H.G. S.X.
0.60 86.0 0.97 PtpAffx.201300.1.S1_s_at pmrna2582 hypothetical protein - 1e-34 At3g13224 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.60 86.0 0.97 PtpAffx.1276.1.S1_at CK091051 hypothetical protein - 9e-73 At5g26751 ATSK11 O.I. H.G. S.X.
0.53 80.5 0.97 PtpAffx.163113.1.S1_s_at CX182719 hypothetical protein - 2e-4 At3g03330 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.47 74.6 0.97 PtpAffx.85760.1.S1_s_at CX181147 hypothetical protein - 6e-6 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.44 71.9 0.98 PtpAffx.218468.1.S1_at pmrna34094 hypothetical protein - 0 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.43 69.7 0.97 PtpAffx.3033.1.S1_at CK101033 hypothetical protein - 1e-26 At1g43690 ubiquitin interaction motif-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.55	82.2	0.96	PtpAffx.204145.1.S1_s_at	pmrna8170	hypothetical protein	-	5e-97	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.
0.60	86.0	0.97	PtpAffx.201300.1.S1_s_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.60	86.0	0.97	PtpAffx.1276.1.S1_at	CK091051	hypothetical protein	-	9e-73	At5g26751	ATSK11	O.I.	H.G.	S.X.
0.53	80.5	0.97	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.47	74.6	0.97	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.44	71.9	0.98	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.43	69.7	0.97	PtpAffx.3033.1.S1_at	CK101033	hypothetical protein	-	1e-26	At1g43690	ubiquitin interaction motif-containing protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.80	96.0	0.96	PtpAffx.133206.1.S1_s_at	BU875939	hypothetical protein	-	4e-19	At1g71080	unknown protein	O.I.	H.G.	S.X.
0.67	91.1	0.95	PtpAffx.203870.1.S1_at	pmrna7644	hypothetical protein	-	2e-62	At1g28420	HB-1 (homeobox-1)	O.I.	H.G.	S.X.
0.55	82.2	0.96	PtpAffx.148735.1.S1_s_at	BU824531	hypothetical protein	-	5e-9	At4g17020	transcription factor-related	O.I.	H.G.	S.X.
0.53	80.5	0.95	PtpAffx.124709.1.S1_at	BU878547	hypothetical protein	-	3e-32	At4g01320	ATSTE24	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.22961.2.S1_a_at	AJ772125	hypothetical protein	-	6e-12	At1g02330	-	O.I.	H.G.	S.X.
0.50	78.6	0.96	PtpAffx.201356.1.S1_s_at	pmrna2691	hypothetical protein	-	8e-9	At3g14750	unknown protein	O.I.	H.G.	S.X.
0.44	71.9	0.95	PtpAffx.214223.1.S1_at	pmrna27673	hypothetical protein	-	1e-29	At5g11040	-	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.36701.1.S1_s_at	CF936040	hypothetical protein	-	1e-34	At2g21270	ubiquitin fusion degradation UFD1 family protein	O.I.	H.G.	S.X.
0.44	71.9	0.97	PtpAffx.7721.2.S1_at	BU879383	-	-	5e-31	At5g37370	ATSRL1	O.I.	H.G.	S.X.
0.42	68.6	0.96	PtpAffx.207982.1.S1_at	pmrna15845	hypothetical protein	-	5e-28	At1g13580	LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)	O.I.	H.G.	S.X.
0.40	67.0	0.95	PtpAffx.73563.1.S1_at	CA934004	hypothetical protein	-	1e-63	At5g46210	CUL4 (CULLIN4)	O.I.	H.G.	S.X.
0.40	67.0	0.96	PtpAffx.5269.5.S1_s_at	CX181989	hypothetical protein	-	4e-62	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.
0.39	64.6	0.93	PtpAffx.87749.1.S1_at	CX180620	-	-	4e-1	At4g13540	unknown protein	O.I.	H.G.	S.X.
0.38	63.7	0.97	PtpAffx.53470.1.S1_at	BU879364	hypothetical protein	-	6e-56	At1g12050	fumarylacetoacetase, putative	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.212008.1.S1_at	pmrna23580	hypothetical protein	-	4e-18	At3g07140	GPI transamidase component Gpi16 subunit family protein	O.I.	H.G.	S.X.
0.36	61.6	0.95	PtpAffx.201345.1.S1_s_at	pmrna2665	integral membrane single C2 domain protein	-	2e-88	At3g14590	-	O.I.	H.G.	S.X.
0.36	61.6	0.96	Ptp.3217.2.S1_at	DN495099	hypothetical protein	-	4e-1	At3g31960	-	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.150651.1.S1_at	BU820333	hypothetical protein	-	9e-17	At1g04950	TAF6 (TBP-ASSOCIATED FACTOR 6)	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.214050.1.S1_at	pmrna27353	-	-	1e+0	At5g45469	unknown protein	O.I.	H.G.	S.X.
0.36	61.6	0.96	PtpAffx.222048.1.S1_at	pmrna39251	hypothetical protein	-	5e-24	At1g24320	alpha-glucosidase, putative	O.I.	H.G.	S.X.
0.36	61.6	0.97	PtpAffx.205235.1.S1_at	pmrna10377	hypothetical protein	-	1e-8	At5g23340	-	O.I.	H.G.	S.X.
0.35	59.7	0.93	PtpAffx.163841.1.S1_at	BI128213	hypothetical protein	-	2e-4	At1g25375	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.
0.35	59.7	0.95	PtpAffx.203092.1.S1_x_at	pmrna6114	hypothetical protein	-	2e-16	At1g32360	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.
0.33	57.5	0.94	PtpAffx.41194.1.S1_s_at	BU810267	hypothetical protein	-	4e-7	At4g32050	neurochondrin family protein	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.122853.1.S1_at	CN524485	histone deacetylase	-	4e-7	At1g08460	HDA08	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.125321.2.S1_at	CX178257	hypothetical protein	-	3e-7	At1g03930	ADK1 (dual specificity kinase 1)	O.I.	H.G.	S.X.
0.33	57.5	0.96	PtpAffx.135342.1.S1_at	CN550200	hypothetical protein	-	2e-40	At2g03270	DNA-binding protein, putative	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.120301.1.S1_at	CF235521	-	-	9e-2	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.
0.33	57.5	0.97	PtpAffx.21417.1.S1_at	CN520322	hypothetical protein	-	3e-135	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.
0.32	55.2	0.96	PtpAffx.158776.1.S1_s_at	CX168578	hypothetical protein	-	1e+0	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	Ptp.5852.1.S1_at	CX176464	hypothetical protein	-	2e-22	At1g48635	peroxin-3 family protein	O.I.	H.G.	S.X.
0.31	53.7	0.94	PtpAffx.33924.2.S1_at	CV255680	-	-	1e+0	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	O.I.	H.G.	S.X.
0.31	53.7	0.95	PtpAffx.13366.1.S1_at	AJ768061	10-formyltetrahydrofolate synthetase /// 10-formyltetrahydrofolate synthetase	-	4e-41	At1g50480	THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.217501.1.S1_s_at	pmrna32788	hypothetical protein	-	8e-7	At1g22540	proton-dependent oligopeptide transport (POT) family protein	O.I.	H.G.	S.X.
0.31	53.7	0.96	PtpAffx.81408.1.S1_s_at	CX173409	hypothetical protein	-	7e-12	At3g12940	unknown protein	O.I.	H.G.	S.X.
0.31	53.7	0.97	Ptp.4517.1.S1_s_at	AJ774652	hypothetical protein	-	9e-22	At1g67650	7S RNA binding	O.I.	H.G.	S.X.
0.30	52.0	0.94	PtpAffx.202383.1.S1_at	pmrna4785	hypothetical protein	-	8e-11	At4g02010	protein kinase family protein	O.I.	H.G.	S.X.
0.30	52.0	0.97	PtpAffx.5904.3.S1_s_at	CN523639	hypothetical protein	-	7e-3	At3g58030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.67330.1.S1_s_at	CK114915	hypothetical protein	-	2e-14	At5g02080	DNA/panthothenate metabolism flavoprotein family protein	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.34699.2.S1_at	CK091654	hypothetical protein	-	7e-36	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.48855.2.S1_a_at	BU835678	hypothetical protein	-	3e-42	At5g22950	VPS24.1	O.I.	H.G.	S.X.
0.29	50.5	0.96	PtpAffx.219908.1.S1_s_at	pmrna36071	NPR1/NIM1-like regulatory protein /// hypothetical protein /// hypothetical protein	-	1e-1	At4g19660	NPR4 (NPR1-like protein 4)	O.I.	H.G.	S.X.
0.28	50.5	0.96	PtpAffx.5364.2.A1_at	CK097487	hypothetical protein	-	4e-25	At1g11890	SEC22	O.I.	H.G.	S.X.
0.28	50.5	0.95	PtpAffx.215430.1.S1_at	pmrna29612	hypothetical protein	-	3e-11	At1g67170	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.95	PtpAffx.163467.1.S1_s_at	BU823164	histone deacetylase	-	6e-24	At3g44680	HDA9 (HISTONE DEACETYLASE 9)	O.I.	H.G.	S.X.
0.27	47.1	0.97	PtpAffx.72383.1.S1_at	BU888356	-	-	2e+0	At4g24265	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.93	PtpAffx.205607.1.S1_at	pmrna11071	hypothetical protein	-	4e-60	At1g21200	transcription factor	O.I.	H.G.	S.X.
0.27	47.1	0.95	Ptp.7154.2.A1_a_at	CV239104	20G-Fe(II) oxidoreductase	-	3e-1	At5g45580	transcription factor	O.I.	H.G.	S.X.
0.27	47.1	0.96	Ptp.3821.1.S1_s_at	CV245704	hypothetical protein	-	7e-9	At3g51610	unknown protein	O.I.	H.G.	S.X.
0.27	47.1	0.96	PtpAffx.112172.1.S1_at	CN518252	hypothetical protein	-	5e-64	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 94.0 GSM244431 non infected tissue, biological rep2 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8 92.1 GSM244439 Mixed infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7 91.8 GSM244435 Mlp infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6 91.3 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.2 89.3 GSM244438 Mmd infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2 89.3 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM372099 Clone3200_LPI5_N+_8w_rep1 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0 88.0 GSM244432 non infected tissue, biological rep3 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9 87.2 GSM244430 non infected tissue, biological rep1 GSE9673 Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.4	94.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.204145.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g01300: protein kinase, putative (HF=5e-97)
Module size	7 genes
NF	0.56
%ile	86.4

Co-expression analysis

Gene ID PtpAffx.204145.1.S1_s_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=5e-97) Module size 7 genes NF 0.56 %ile 86.4

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.204145.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g01300: protein kinase, putative (HF=5e-97)

Module size 7 genes

NF 0.56

%ile 86.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays