Co-expression analysis

Gene ID PtpAffx.204145.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g01300: protein kinase, putative (HF=5e-97)
Module size 7 genes
NF 0.56
%ile 86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.96PtpAffx.204145.1.S1_s_atpmrna8170hypothetical protein-5e-97At3g01300protein kinase, putativeO.I.H.G.S.X.
0.6086.00.97PtpAffx.201300.1.S1_s_atpmrna2582hypothetical protein-1e-34At3g13224RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.6086.00.97PtpAffx.1276.1.S1_atCK091051hypothetical protein-9e-73At5g26751ATSK11O.I.H.G.S.X.
0.5380.50.97PtpAffx.163113.1.S1_s_atCX182719hypothetical protein-2e-4At3g03330short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.4774.60.97PtpAffx.85760.1.S1_s_atCX181147hypothetical protein-6e-6At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.4471.90.98PtpAffx.218468.1.S1_atpmrna34094hypothetical protein-0At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.4369.70.97PtpAffx.3033.1.S1_atCK101033hypothetical protein-1e-26At1g43690ubiquitin interaction motif-containing proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8096.00.96PtpAffx.133206.1.S1_s_atBU875939hypothetical protein-4e-19At1g71080unknown proteinO.I.H.G.S.X.
0.6791.10.95PtpAffx.203870.1.S1_atpmrna7644hypothetical protein-2e-62At1g28420HB-1 (homeobox-1)O.I.H.G.S.X.
0.5582.20.96PtpAffx.148735.1.S1_s_atBU824531hypothetical protein-5e-9At4g17020transcription factor-relatedO.I.H.G.S.X.
0.5380.50.95PtpAffx.124709.1.S1_atBU878547hypothetical protein-3e-32At4g01320ATSTE24O.I.H.G.S.X.
0.5078.60.96PtpAffx.22961.2.S1_a_atAJ772125hypothetical protein-6e-12At1g02330-O.I.H.G.S.X.
0.5078.60.96PtpAffx.201356.1.S1_s_atpmrna2691hypothetical protein-8e-9At3g14750unknown proteinO.I.H.G.S.X.
0.4471.90.95PtpAffx.214223.1.S1_atpmrna27673hypothetical protein-1e-29At5g11040-O.I.H.G.S.X.
0.4471.90.97PtpAffx.36701.1.S1_s_atCF936040hypothetical protein-1e-34At2g21270ubiquitin fusion degradation UFD1 family proteinO.I.H.G.S.X.
0.4471.90.97PtpAffx.7721.2.S1_atBU879383--5e-31At5g37370ATSRL1O.I.H.G.S.X.
0.4268.60.96PtpAffx.207982.1.S1_atpmrna15845hypothetical protein-5e-28At1g13580LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3)O.I.H.G.S.X.
0.4067.00.95PtpAffx.73563.1.S1_atCA934004hypothetical protein-1e-63At5g46210CUL4 (CULLIN4)O.I.H.G.S.X.
0.4067.00.96PtpAffx.5269.5.S1_s_atCX181989hypothetical protein-4e-62At3g10330transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)O.I.H.G.S.X.
0.3964.60.93PtpAffx.87749.1.S1_atCX180620--4e-1At4g13540unknown proteinO.I.H.G.S.X.
0.3863.70.97PtpAffx.53470.1.S1_atBU879364hypothetical protein-6e-56At1g12050fumarylacetoacetase, putativeO.I.H.G.S.X.
0.3661.60.95PtpAffx.212008.1.S1_atpmrna23580hypothetical protein-4e-18At3g07140GPI transamidase component Gpi16 subunit family proteinO.I.H.G.S.X.
0.3661.60.95PtpAffx.201345.1.S1_s_atpmrna2665integral membrane single C2 domain protein-2e-88At3g14590-O.I.H.G.S.X.
0.3661.60.96Ptp.3217.2.S1_atDN495099hypothetical protein-4e-1At3g31960-O.I.H.G.S.X.
0.3661.60.96PtpAffx.150651.1.S1_atBU820333hypothetical protein-9e-17At1g04950TAF6 (TBP-ASSOCIATED FACTOR 6)O.I.H.G.S.X.
0.3661.60.96PtpAffx.214050.1.S1_atpmrna27353--1e+0At5g45469unknown proteinO.I.H.G.S.X.
0.3661.60.96PtpAffx.222048.1.S1_atpmrna39251hypothetical protein-5e-24At1g24320alpha-glucosidase, putativeO.I.H.G.S.X.
0.3661.60.97PtpAffx.205235.1.S1_atpmrna10377hypothetical protein-1e-8At5g23340-O.I.H.G.S.X.
0.3559.70.93PtpAffx.163841.1.S1_atBI128213hypothetical protein-2e-4At1g25375metallo-beta-lactamase family proteinO.I.H.G.S.X.
0.3559.70.95PtpAffx.203092.1.S1_x_atpmrna6114hypothetical protein-2e-16At1g32360zinc finger (CCCH-type) family proteinO.I.H.G.S.X.
0.3357.50.94PtpAffx.41194.1.S1_s_atBU810267hypothetical protein-4e-7At4g32050neurochondrin family proteinO.I.H.G.S.X.
0.3357.50.96PtpAffx.122853.1.S1_atCN524485histone deacetylase-4e-7At1g08460HDA08O.I.H.G.S.X.
0.3357.50.96PtpAffx.125321.2.S1_atCX178257hypothetical protein-3e-7At1g03930ADK1 (dual specificity kinase 1)O.I.H.G.S.X.
0.3357.50.96PtpAffx.135342.1.S1_atCN550200hypothetical protein-2e-40At2g03270DNA-binding protein, putativeO.I.H.G.S.X.
0.3357.50.97PtpAffx.120301.1.S1_atCF235521--9e-2At1g54360TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)O.I.H.G.S.X.
0.3357.50.97PtpAffx.21417.1.S1_atCN520322hypothetical protein-3e-135At3g19980ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)O.I.H.G.S.X.
0.3255.20.96PtpAffx.158776.1.S1_s_atCX168578hypothetical protein-1e+0At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.3153.70.94Ptp.5852.1.S1_atCX176464hypothetical protein-2e-22At1g48635peroxin-3 family proteinO.I.H.G.S.X.
0.3153.70.94PtpAffx.33924.2.S1_atCV255680--1e+0At1g43890ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)O.I.H.G.S.X.
0.3153.70.95PtpAffx.13366.1.S1_atAJ76806110-formyltetrahydrofolate synthetase /// 10-formyltetrahydrofolate synthetase-4e-41At1g50480THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)O.I.H.G.S.X.
0.3153.70.96PtpAffx.217501.1.S1_s_atpmrna32788hypothetical protein-8e-7At1g22540proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.
0.3153.70.96PtpAffx.81408.1.S1_s_atCX173409hypothetical protein-7e-12At3g12940unknown proteinO.I.H.G.S.X.
0.3153.70.97Ptp.4517.1.S1_s_atAJ774652hypothetical protein-9e-22At1g676507S RNA bindingO.I.H.G.S.X.
0.3052.00.94PtpAffx.202383.1.S1_atpmrna4785hypothetical protein-8e-11At4g02010protein kinase family proteinO.I.H.G.S.X.
0.3052.00.97PtpAffx.5904.3.S1_s_atCN523639hypothetical protein-7e-3At3g58030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2950.50.95PtpAffx.67330.1.S1_s_atCK114915hypothetical protein-2e-14At5g02080DNA/panthothenate metabolism flavoprotein family proteinO.I.H.G.S.X.
0.2950.50.96PtpAffx.34699.2.S1_atCK091654hypothetical protein-7e-36At4g36690ATU2AF65AO.I.H.G.S.X.
0.2950.50.96PtpAffx.48855.2.S1_a_atBU835678hypothetical protein-3e-42At5g22950VPS24.1O.I.H.G.S.X.
0.2950.50.96PtpAffx.219908.1.S1_s_atpmrna36071NPR1/NIM1-like regulatory protein /// hypothetical protein /// hypothetical protein-1e-1At4g19660NPR4 (NPR1-like protein 4)O.I.H.G.S.X.
0.2850.50.96PtpAffx.5364.2.A1_atCK097487hypothetical protein-4e-25At1g11890SEC22O.I.H.G.S.X.
0.2850.50.95PtpAffx.215430.1.S1_atpmrna29612hypothetical protein-3e-11At1g67170unknown proteinO.I.H.G.S.X.
0.2747.10.95PtpAffx.163467.1.S1_s_atBU823164histone deacetylase-6e-24At3g44680HDA9 (HISTONE DEACETYLASE 9)O.I.H.G.S.X.
0.2747.10.97PtpAffx.72383.1.S1_atBU888356--2e+0At4g24265unknown proteinO.I.H.G.S.X.
0.2747.10.93PtpAffx.205607.1.S1_atpmrna11071hypothetical protein-4e-60At1g21200transcription factorO.I.H.G.S.X.
0.2747.10.95Ptp.7154.2.A1_a_atCV23910420G-Fe(II) oxidoreductase-3e-1At5g45580transcription factorO.I.H.G.S.X.
0.2747.10.96Ptp.3821.1.S1_s_atCV245704hypothetical protein-7e-9At3g51610unknown proteinO.I.H.G.S.X.
0.2747.10.96PtpAffx.112172.1.S1_atCN518252hypothetical protein-5e-64At4g00660DEAD/DEAH box helicase, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.494.0GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.892.1GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.791.8GSM244435Mlp infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.691.3GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM244438Mmd infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM372099Clone3200_LPI5_N+_8w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.987.2GSM244430non infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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