Co-expression analysis

Gene ID	PtpAffx.204145.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g01300: protein kinase, putative (HF=5e-97)
Module size	7 genes
NF	0.56
%ile	86.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.96	PtpAffx.204145.1.S1_s_at	pmrna8170	hypothetical protein	-	5e-97	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.201300.1.S1_s_at	pmrna2582	hypothetical protein	-	1e-34	At3g13224	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	0.97	PtpAffx.1276.1.S1_at	CK091051	hypothetical protein	-	9e-73	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.97	PtpAffx.163113.1.S1_s_at	CX182719	hypothetical protein	-	2e-4	At3g03330	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.97	PtpAffx.85760.1.S1_s_at	CX181147	hypothetical protein	-	6e-6	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.98	PtpAffx.218468.1.S1_at	pmrna34094	hypothetical protein	-	0	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.97	PtpAffx.3033.1.S1_at	CK101033	hypothetical protein	-	1e-26	At1g43690	ubiquitin interaction motif-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	94.0	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.8	92.1	GSM244439	Mixed infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.7	91.8	GSM244435	Mlp infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.6	91.3	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM244438	Mmd infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.2	89.3	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372099	Clone3200_LPI5_N+_8w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.0	88.0	GSM244432	non infected tissue, biological rep3	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.9	87.2	GSM244430	non infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi

Inter-species module comparison

A co-expression module including the maize gene, Zm.4078.1.A1_at, orthologous to the query gene, PtpAffx.204145.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	Zm.4078.1.A1_at	At3g01300	protein kinase APK1A	-	6e-16	At3g01300	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.16834.1.A1_at	At3g01300	-	-	4e-1	At1g64370	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.7387.1.A1_at	At3g01300	-	-	2e+1	At5g18403	-	O.I.	H.G.	S.X.	Please select
0.52	67.3	Zm.2946.1.S1_at	At3g01300	-	-	1e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.8842.1.A1_at	At3g01300	hypothetical protein LOC100193075	-	1e+0	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	O.I.	H.G.	S.X.	Please select
0.40	48.5	Zm.10656.1.A1_at	At3g01300	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.33	36.0	Zm.625.1.S1_at	At3g01300	MAP kinase phosphatase	-	1e-1	At1g44020	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	Zm.14470.1.S1_a_at	At3g01300	hypothetical protein LOC100279736 /// GTP-binding protein SAR1A	-	2e-19	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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