Co-expression analysis

Gene ID	PtpAffx.204053.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g38660: APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) (HF=2e-30)
Module size	6 genes
NF	0.66
%ile	94.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.96	PtpAffx.204053.1.S1_x_at	pmrna7991	hypothetical protein	-	2e-30	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.97	PtpAffx.135079.1.S1_s_at	DN496393	hypothetical protein	-	1e-19	At5g38660	APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.96	PtpAffx.138160.1.S1_s_at	AJ767883	hypothetical protein	-	3e-29	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.96	PtpAffx.118933.1.S1_s_at	DN500879	hypothetical protein	-	1e-43	At1g17220	FUG1 (fu-gaeri1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.97	PtpAffx.35031.1.S1_at	BU810466	hypothetical protein	-	9e-19	At1g55480	binding / protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.97	PtpAffx.86181.1.S1_at	BI126733	-	-	4e-16	At1g54520	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.7	94.7	GSM328059	Populus x canescens leaf control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.5	94.3	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM328275	Populus x canescens leaf hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328274	Populus x canescens leaf hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM244431	non infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.5	90.9	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM372096	Clone3200_LPI5_N-_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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