Co-expression analysis

Gene ID PtpAffx.204028.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g65960: GAD2 (GLUTAMATE DECARBOXYLASE 2) (HF=6e-60)
Module size 6 genes
NF 0.61
%ile 90.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.21.00PtpAffx.204028.1.S1_atpmrna7945hypothetical protein-6e-60At1g65960GAD2 (GLUTAMATE DECARBOXYLASE 2)O.I.H.G.S.X.
0.7393.61.00PtpAffx.206298.1.S1_atpmrna12485hypothetical protein-2e-17At3g54100unknown proteinO.I.H.G.S.X.
0.6791.11.00PtpAffx.200244.1.S1_atpmrna472hypothetical protein-3e-13At5g13150ATEXO70C1 (exocyst subunit EXO70 family protein C1)O.I.H.G.S.X.
0.6791.11.00PtpAffx.204952.1.S1_atpmrna9797hypothetical protein-6e-13At3g46750unknown proteinO.I.H.G.S.X.
0.4268.61.00PtpAffx.202223.1.S1_atpmrna4451hypothetical protein-1e-30At4g00350MATE efflux family proteinO.I.H.G.S.X.
0.2747.11.00PtpAffx.85451.1.S1_s_atCV131357hypothetical protein-8e-129At3g04120GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.697.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM334225Populus balsamifera_1006_mature_leaf_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM334226Populus balsamifera_1006_mature_leaf_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM334224Populus balsamifera_1006_mature_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.289.3GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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