Co-expression analysis

Gene ID PtpAffx.203959.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g28580: AAA-type ATPase family protein (HF=1e-17)
Module size 10 genes
NF 0.32
%ile 56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6287.20.84PtpAffx.203959.1.S1_s_atpmrna7812hypothetical protein-1e-17At3g28580AAA-type ATPase family proteinO.I.H.G.S.X.
0.4875.40.89PtpAffx.56861.1.A1_atCV249063hypothetical protein-9e-2At1g23510unknown proteinO.I.H.G.S.X.
0.4471.90.90PtpAffx.62380.1.S1_s_atBP936324hypothetical protein-1e+0At1g48940plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.4369.70.91PtpAffx.219237.1.S1_atpmrna35094multidrug resistance protein ABC transporter family-2e-12At1g30410ATMRP13O.I.H.G.S.X.
0.3762.30.86PtpAffx.102143.1.A1_s_atCV235917AP2/ERF domain-containing transcription factor-3e-10At5g51190AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.3762.30.88PtpAffx.145.1.A1_atCV269750hypothetical protein-2e-3At1g33700catalytic/ glucosylceramidaseO.I.H.G.S.X.
0.3458.30.88PtpAffx.84833.1.S1_atCV241171hypothetical protein-2e-1At1g60710ATB2O.I.H.G.S.X.
0.3052.00.91PtpAffx.213504.1.S1_atpmrna26400hypothetical protein-1e-22At4g30080ARF16 (AUXIN RESPONSE FACTOR 16)O.I.H.G.S.X.
0.1729.10.87PtpAffx.998.1.A1_atCV264521hypothetical protein-3e+0At5g65495unknown proteinO.I.H.G.S.X.
0.0914.60.88PtpAffx.18117.1.S1_s_atCK114073hypothetical protein-4e+0At2g47760ALG3O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.097.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328070Populus x canescens leaf control_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244433Mlp infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.886.4GSM244437Mmd infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244432non infected tissue, biological rep3GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.785.5GSM244431non infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.684.5GSM362883Clone1979_LPI2_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.684.5GSM362885Clone1979_LPI2_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage