Co-expression analysis

Gene ID PtpAffx.203951.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g60890: ZPR2 (LITTLE ZIPPER 2) (HF=3e-1)
Module size 6 genes
NF 0.14
%ile 27.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8397.00.79PtpAffx.203951.1.S1_atpmrna7800hypothetical protein-3e-1At3g60890ZPR2 (LITTLE ZIPPER 2)O.I.H.G.S.X.
0.3153.70.82PtpAffx.153794.1.A1_atCV242349--6e-2At3g54990SMZ (SCHLAFMUTZE)O.I.H.G.S.X.
0.1626.90.84PtpAffx.213978.1.S1_atpmrna27239hypothetical protein-8e-3At3g06360AGP27O.I.H.G.S.X.
0.1118.10.86PtpAffx.69722.1.A1_atCV245584--1e-3At5g56840DNA-binding family proteinO.I.H.G.S.X.
0.1118.10.86PtpAffx.102029.1.A1_atCV240650--4e-35At3g62980TIR1 (TRANSPORT INHIBITOR RESPONSE 1)O.I.H.G.S.X.
0.058.30.86PtpAffx.201146.1.S1_atpmrna2251hypothetical protein-6e-1At1g76750unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.597.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.396.9GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
5.196.8GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM372092Clone3200_LPI2_N-_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.791.8GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328062Populus x canescens leaf control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.289.3GSM362886Clone1979_LPI2_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.987.2GSM244439Mixed infected tissue, biological rep1GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO
1.886.4GSM372093Clone3200_LPI5_N+_4w_rep1GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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