Co-expression analysis

Gene ID PtpAffx.203874.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g28380: NSL1 (necrotic spotted lesions 1) (HF=4e-12)
Module size 8 genes
NF 0.06
%ile 12.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.50.90PtpAffx.203874.1.S1_atpmrna7654hypothetical protein-4e-12At1g28380NSL1 (necrotic spotted lesions 1)O.I.H.G.S.X.
0.2950.50.93PtpAffx.132626.1.S1_s_atCX170249hypothetical protein-1e-4At2g31130unknown proteinO.I.H.G.S.X.
0.0812.90.94PtpAffx.9076.2.S1_atBU809324hypothetical protein-2e-3At1g05820aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.0711.60.92Ptp.5840.2.S1_a_atBI128120hypothetical protein-6e-9At5g47320RPS19 (RIBOSOMAL PROTEIN S19)O.I.H.G.S.X.
0.058.30.92PtpAffx.112555.2.S1_s_atCV242108hypothetical protein-2e-96At1g15110phosphatidyl serine synthase family proteinO.I.H.G.S.X.
0.058.30.92PtpAffx.124319.1.S1_a_atCV256648hypothetical protein-2e-19At5g24810ABC1 family proteinO.I.H.G.S.X.
0.023.60.92PtpAffx.211016.1.S1_atpmrna21649hypothetical protein-5e-29At1g10095protein prenyltransferaseO.I.H.G.S.X.
0.023.60.93PtpAffx.208703.1.S1_atpmrna17262aminophospholipid ATPase-0At1g59820ALA3 (Aminophospholipid ATPase3)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3357.50.91PtpAffx.215206.1.S1_atpmrna29257hypothetical protein-5e-2At1g76140serine-type endopeptidase/ serine-type peptidaseO.I.H.G.S.X.
0.3153.70.93PtpAffx.207232.1.S1_atpmrna14340hypothetical protein-3e-32At1g16540ABA3 (ABA DEFICIENT 3)O.I.H.G.S.X.
0.2950.50.87PtpAffx.224867.1.S1_atpmrna43755hypothetical protein-1e-2At1g06580pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2950.50.91PtpAffx.13344.3.S1_s_atBI122422--5e-6At1g01720ATAF1O.I.H.G.S.X.
0.2543.60.93Ptp.4495.1.S1_s_atCV274498hypothetical protein-2e-72At1g10430PP2A-2O.I.H.G.S.X.
0.2238.30.89PtpAffx.200038.1.S1_atpmrna67neutral amino acid transport protein-8e-7At3g13620amino acid permease family proteinO.I.H.G.S.X.
0.2238.30.90PtpAffx.222484.1.S1_atpmrna39941hypothetical protein-1e-29At4g38360unknown proteinO.I.H.G.S.X.
0.2238.30.91PtpAffx.200620.1.S1_x_atpmrna1210--1e-18At1g15240phox (PX) domain-containing proteinO.I.H.G.S.X.
0.1830.80.93Ptp.2967.1.S1_s_atDN489007hypothetical protein-5e-42At5g48230ACAT2 (ACETOACETYL-COA THIOLASE 2)O.I.H.G.S.X.
0.1626.90.95Ptp.5383.1.S1_atAJ768686hypothetical protein-1e-32At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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