Co-expression analysis

Gene ID PtpAffx.203874.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g28380: NSL1 (necrotic spotted lesions 1) (HF=4e-12)
Module size 8 genes
NF 0.06
%ile 12.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9399.50.90PtpAffx.203874.1.S1_atpmrna7654hypothetical protein-4e-12At1g28380NSL1 (necrotic spotted lesions 1)O.I.H.G.S.X.
0.2950.50.93PtpAffx.132626.1.S1_s_atCX170249hypothetical protein-1e-4At2g31130unknown proteinO.I.H.G.S.X.
0.0812.90.94PtpAffx.9076.2.S1_atBU809324hypothetical protein-2e-3At1g05820aspartic-type endopeptidase/ peptidaseO.I.H.G.S.X.
0.0711.60.92Ptp.5840.2.S1_a_atBI128120hypothetical protein-6e-9At5g47320RPS19 (RIBOSOMAL PROTEIN S19)O.I.H.G.S.X.
0.058.30.92PtpAffx.112555.2.S1_s_atCV242108hypothetical protein-2e-96At1g15110phosphatidyl serine synthase family proteinO.I.H.G.S.X.
0.058.30.92PtpAffx.124319.1.S1_a_atCV256648hypothetical protein-2e-19At5g24810ABC1 family proteinO.I.H.G.S.X.
0.023.60.92PtpAffx.211016.1.S1_atpmrna21649hypothetical protein-5e-29At1g10095protein prenyltransferaseO.I.H.G.S.X.
0.023.60.93PtpAffx.208703.1.S1_atpmrna17262aminophospholipid ATPase-0At1g59820ALA3 (Aminophospholipid ATPase3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.0GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.694.5GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.594.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.293.5GSM327380Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM327398Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.289.3GSM372098Clone3200_LPI5_N-_8w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.088.0GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610762_at, orthologous to the query gene, PtpAffx.203874.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6283.31610762_atAt1g28380--1e-114Atcg01280-O.I.H.G.S.X.
0.8394.61622744_atAt1g28380similar to Os01g0789500 /// similar to ribosomal protein S3-2e-42Atcg00820-O.I.H.G.S.X.
0.8193.71617605_atAt1g28380--0Atcg00680-O.I.H.G.S.X.
0.7992.71618379_s_atAt1g28380--1e+0At3g49115unknown proteinO.I.H.G.S.X.
0.7691.51612624_atAt1g28380similar to Os06g0598500-0Atcg00540-O.I.H.G.S.X.
0.7491.01609422_a_atAt1g28380--2e-12Atcg00050-O.I.H.G.S.X.
0.7189.51619209_atAt1g28380--2e+0At1g76680OPR1O.I.H.G.S.X.
0.6988.31609479_s_atAt1g28380--1e+0At3g10590myb family transcription factorO.I.H.G.S.X.
0.6787.91614040_atAt1g28380similar to RNA polymerase beta subunit-0Atcg00170-O.I.H.G.S.X.
0.6585.01614545_s_atAt1g28380similar to RNA polymerase beta subunit-5e-67Atcg00170-O.I.H.G.S.X.
0.6384.31622410_s_atAt1g28380--5e-9Atcg00050-O.I.H.G.S.X.
0.6183.21613911_s_atAt1g28380similar to Os01g0789500 /// similar to ribosomal protein S3-2e-42Atcg00820-O.I.H.G.S.X.
0.5980.61622364_atAt1g28380--2e+0At5g62750unknown proteinO.I.H.G.S.X.
0.4158.71621593_s_atAt1g28380--2e+0At2g31083CLE5 (CLAVATA3/ESR-RELATED 5)O.I.H.G.S.X.
0.3853.61614676_s_atAt1g28380ATP synthase subunit a, chloroplastic-0Atcg00120-O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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