CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.203818.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=3e-2)

Module size 19 genes

NF 0.20

%ile 36.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.85 97.2 0.93 PtpAffx.203818.1.S1_x_at pmrna7547 hypothetical protein - 3e-2 At1g12520 ATCCS (COPPER CHAPERONE FOR SOD1) O.I. H.G. S.X.
0.43 69.7 0.93 PtpAffx.213950.1.S1_at pmrna27193 hypothetical protein - 5e-4 At5g15280 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.39 64.6 0.94 PtpAffx.218536.1.S1_s_at pmrna34192 hypothetical protein - 7e-1 At2g19700 unknown protein O.I. H.G. S.X.
0.29 50.5 0.95 PtpAffx.11566.1.A1_at CV260969 hypothetical protein - 4e+0 At5g54190 PORA O.I. H.G. S.X.
0.29 50.5 0.95 PtpAffx.24905.1.S1_a_at CV241886 hypothetical protein - 6e-1 At1g67710 ARR11 (RESPONSE REGULATOR 11) O.I. H.G. S.X.
0.28 50.5 0.93 PtpAffx.81831.1.S1_at CV271583 hypothetical protein - 3e-2 At5g37055 SEF (SERRATED LEAVES AND EARLY FLOWERING) O.I. H.G. S.X.
0.26 45.2 0.96 PtpAffx.11488.1.S1_at CV244200 hypothetical protein - 6e-49 At4g31720 TAFII15 (TBP-ASSOCIATED FACTOR II 15) O.I. H.G. S.X.
0.25 43.6 0.95 PtpAffx.2405.1.S1_at CK090525 hypothetical protein - 2e-17 At5g42370 unknown protein O.I. H.G. S.X.
0.25 43.6 0.97 Ptp.1651.1.A1_at CV248691 hypothetical protein - 7e-9 At2g19430 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.23 40.5 0.95 Ptp.1082.1.A1_a_at BI122772 hypothetical protein - 2e-28 At2g01060 myb family transcription factor O.I. H.G. S.X.
0.22 38.3 0.94 PtpAffx.68177.1.A1_s_at CX658713 hypothetical protein - 2e-3 At4g01590 unknown protein O.I. H.G. S.X.
0.20 34.6 0.94 PtpAffx.105300.1.S1_at BU823312 hypothetical protein - 1e+0 At3g25190 nodulin, putative O.I. H.G. S.X.
0.16 26.9 0.97 PtpAffx.10545.1.S1_at CK096379 hypothetical protein - 5e-26 At5g38630 ACYB-1 O.I. H.G. S.X.
0.15 25.3 0.96 PtpAffx.216142.1.S1_s_at pmrna30747 enhancer of polycomb-like protein - 7e-29 At1g16690 transcription factor-related O.I. H.G. S.X.
0.14 23.5 0.94 PtpAffx.160485.2.A1_a_at CV273061 hypothetical protein - 2e+0 At1g08160 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related O.I. H.G. S.X.
0.11 18.1 0.94 PtpAffx.215548.1.S1_x_at pmrna29808 hypothetical protein - 9e-74 Atcg00670 - O.I. H.G. S.X.
0.11 18.1 0.94 PtpAffx.18257.1.S1_at CV251973 - - 7e-37 At2g18400 ribosomal protein L6 family protein O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.69902.1.A1_s_at CV239174 hypothetical protein - 5e-1 At5g17060 ATARFB1B O.I. H.G. S.X.
0.07 11.6 0.94 PtpAffx.106353.1.A1_at DN486186 - - 3e-4 At5g02410 DIE2/ALG10 family O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.85	97.2	0.93	PtpAffx.203818.1.S1_x_at	pmrna7547	hypothetical protein	-	3e-2	At1g12520	ATCCS (COPPER CHAPERONE FOR SOD1)	O.I.	H.G.	S.X.
0.43	69.7	0.93	PtpAffx.213950.1.S1_at	pmrna27193	hypothetical protein	-	5e-4	At5g15280	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.39	64.6	0.94	PtpAffx.218536.1.S1_s_at	pmrna34192	hypothetical protein	-	7e-1	At2g19700	unknown protein	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.11566.1.A1_at	CV260969	hypothetical protein	-	4e+0	At5g54190	PORA	O.I.	H.G.	S.X.
0.29	50.5	0.95	PtpAffx.24905.1.S1_a_at	CV241886	hypothetical protein	-	6e-1	At1g67710	ARR11 (RESPONSE REGULATOR 11)	O.I.	H.G.	S.X.
0.28	50.5	0.93	PtpAffx.81831.1.S1_at	CV271583	hypothetical protein	-	3e-2	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	O.I.	H.G.	S.X.
0.26	45.2	0.96	PtpAffx.11488.1.S1_at	CV244200	hypothetical protein	-	6e-49	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.
0.25	43.6	0.95	PtpAffx.2405.1.S1_at	CK090525	hypothetical protein	-	2e-17	At5g42370	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.97	Ptp.1651.1.A1_at	CV248691	hypothetical protein	-	7e-9	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.23	40.5	0.95	Ptp.1082.1.A1_a_at	BI122772	hypothetical protein	-	2e-28	At2g01060	myb family transcription factor	O.I.	H.G.	S.X.
0.22	38.3	0.94	PtpAffx.68177.1.A1_s_at	CX658713	hypothetical protein	-	2e-3	At4g01590	unknown protein	O.I.	H.G.	S.X.
0.20	34.6	0.94	PtpAffx.105300.1.S1_at	BU823312	hypothetical protein	-	1e+0	At3g25190	nodulin, putative	O.I.	H.G.	S.X.
0.16	26.9	0.97	PtpAffx.10545.1.S1_at	CK096379	hypothetical protein	-	5e-26	At5g38630	ACYB-1	O.I.	H.G.	S.X.
0.15	25.3	0.96	PtpAffx.216142.1.S1_s_at	pmrna30747	enhancer of polycomb-like protein	-	7e-29	At1g16690	transcription factor-related	O.I.	H.G.	S.X.
0.14	23.5	0.94	PtpAffx.160485.2.A1_a_at	CV273061	hypothetical protein	-	2e+0	At1g08160	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.
0.11	18.1	0.94	PtpAffx.215548.1.S1_x_at	pmrna29808	hypothetical protein	-	9e-74	Atcg00670	-	O.I.	H.G.	S.X.
0.11	18.1	0.94	PtpAffx.18257.1.S1_at	CV251973	-	-	7e-37	At2g18400	ribosomal protein L6 family protein	O.I.	H.G.	S.X.
0.07	11.6	0.94	PtpAffx.69902.1.A1_s_at	CV239174	hypothetical protein	-	5e-1	At5g17060	ATARFB1B	O.I.	H.G.	S.X.
0.07	11.6	0.94	PtpAffx.106353.1.A1_at	DN486186	-	-	3e-4	At5g02410	DIE2/ALG10 family	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.1 96.8 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.2 95.6 GSM327412 Populus balsamifera_1006_differentiating_xylem_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327405 Populus balsamifera_1006_young_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.7 91.8 GSM327406 Populus balsamifera_1006_young_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM334225 Populus balsamifera_1006_mature_leaf_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM327413 Populus balsamifera_1006_differentiating_xylem_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327411 Populus balsamifera_1006_differentiating_xylem_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM334224 Populus balsamifera_1006_mature_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
1.7 85.5 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.5 83.5 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.1	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.2	95.6	GSM327412	Populus balsamifera_1006_differentiating_xylem_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327405	Populus balsamifera_1006_young_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.7	91.8	GSM327406	Populus balsamifera_1006_young_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM334225	Populus balsamifera_1006_mature_leaf_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327413	Populus balsamifera_1006_differentiating_xylem_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.7	85.5	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	PtpAffx.203818.1.S1_x_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=3e-2)
Module size	19 genes
NF	0.20
%ile	36.7

Co-expression analysis

Gene ID PtpAffx.203818.1.S1_x_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=3e-2) Module size 19 genes NF 0.20 %ile 36.7

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.203818.1.S1_x_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At1g12520: ATCCS (COPPER CHAPERONE FOR SOD1) (HF=3e-2)

Module size 19 genes

NF 0.20

%ile 36.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays