CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.203617.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g13480: unknown protein (HF=1e-7)

Module size 6 genes

NF 0.37

%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.203617.1.S1_at pmrna7167 hypothetical protein - 1e-7 At3g13480 unknown protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.4868.3.S1_a_at CV266607 f-box family protein - 3e-1 At1g55000 peptidoglycan-binding LysM domain-containing protein O.I. H.G. S.X.
0.44 71.9 0.90 PtpAffx.135298.1.A1_at CV232578 hypothetical protein - 1e+0 At1g16490 MYB58 (MYB DOMAIN PROTEIN 58) O.I. H.G. S.X.
0.43 69.7 0.92 PtpAffx.73309.1.S1_a_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase O.I. H.G. S.X.
0.19 32.7 0.91 PtpAffx.4328.1.S1_a_at CX180970 hypothetical protein - 1e-5 At1g56700 pyrrolidone-carboxylate peptidase family protein O.I. H.G. S.X.
0.18 30.8 0.90 PtpAffx.127528.1.A1_s_at CV255049 hypothetical protein - 1e-10 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	0.92	PtpAffx.19734.2.A1_at	CV248852	-	-	1e+0	At5g26990	drought-responsive family protein	O.I.	H.G.	S.X.
0.50	78.6	0.87	PtpAffx.207867.1.S1_at	pmrna15617	hypothetical protein	-	1e-3	At3g24810	ICK3	O.I.	H.G.	S.X.
0.50	78.6	0.89	PtpAffx.159753.2.A1_at	CV267608	hypothetical protein	-	4e-1	At1g75010	ARC3 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3)	O.I.	H.G.	S.X.
0.44	71.9	0.89	PtpAffx.63756.2.S1_at	CV274245	-	-	3e-1	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	O.I.	H.G.	S.X.
0.40	67.0	0.87	PtpAffx.12675.2.A1_a_at	CV227850	-	-	1e+0	At1g69510	-	O.I.	H.G.	S.X.
0.40	67.0	0.88	PtpAffx.52176.1.A1_a_at	CV282348	hypothetical protein	-	6e-16	At5g47240	atnudt8 (Arabidopsis thaliana Nudix hydrolase homolog 8)	O.I.	H.G.	S.X.
0.40	67.0	0.88	PtpAffx.24545.1.A1_at	CV256354	hypothetical protein	-	3e-1	At1g10745	-	O.I.	H.G.	S.X.
0.33	57.5	0.85	PtpAffx.147121.1.A1_at	CV251950	-	-	2e-1	At2g45950	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	O.I.	H.G.	S.X.
0.31	53.7	0.83	PtpAffx.154338.1.S1_at	AJ779532	-	-	1e-6	At1g21245	wall-associated kinase-related	O.I.	H.G.	S.X.
0.31	53.7	0.83	Ptp.3732.2.A1_at	CV273470	-	-	7e-1	At2g31350	GLX2-5 (GLYOXALASE 2-5)	O.I.	H.G.	S.X.
0.27	47.1	0.86	PtpAffx.148422.1.S1_at	BP922841	-	-	2e+0	At3g03100	NADH:ubiquinone oxidoreductase family protein	O.I.	H.G.	S.X.
0.25	43.6	0.83	PtpAffx.210018.1.S1_at	pmrna19751	hypothetical protein	-	8e-1	At2g11773	unknown protein	O.I.	H.G.	S.X.
0.25	43.6	0.92	PtpAffx.20179.1.A1_at	CV272190	hypothetical protein	-	8e+0	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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