Co-expression analysis

Gene ID	PtpAffx.203617.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13480: unknown protein (HF=1e-7)
Module size	6 genes
NF	0.37
%ile	64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.203617.1.S1_at	pmrna7167	hypothetical protein	-	1e-7	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.4868.3.S1_a_at	CV266607	f-box family protein	-	3e-1	At1g55000	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.90	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.73309.1.S1_a_at	CV253817	hypothetical protein	-	3e-11	At2g22425	peptidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.4328.1.S1_a_at	CX180970	hypothetical protein	-	1e-5	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	PtpAffx.127528.1.A1_s_at	CV255049	hypothetical protein	-	1e-10	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the grape gene, 1616105_at, orthologous to the query gene, PtpAffx.203617.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1616105_at	At3g13480	hypothetical protein LOC100266507	-	6e-2	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	80.6	1612967_at	At3g13480	hypothetical protein LOC100251827	-	5e-23	At1g74750	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1615372_at	At3g13480	hypothetical protein LOC100246884	-	3e+0	At5g28052	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1622461_at	At3g13480	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1613746_at	At3g13480	hypothetical protein LOC100267664	-	1e+0	At1g07640	OBP2	O.I.	H.G.	S.X.	Please select
0.31	41.3	1616449_at	At3g13480	hypothetical protein LOC100247509	-	3e-1	At2g36295	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Zea_mays

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