Co-expression analysis

Gene ID	PtpAffx.203617.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13480: unknown protein (HF=1e-7)
Module size	6 genes
NF	0.37
%ile	64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.203617.1.S1_at	pmrna7167	hypothetical protein	-	1e-7	At3g13480	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.90	PtpAffx.4868.3.S1_a_at	CV266607	f-box family protein	-	3e-1	At1g55000	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.90	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.92	PtpAffx.73309.1.S1_a_at	CV253817	hypothetical protein	-	3e-11	At2g22425	peptidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.91	PtpAffx.4328.1.S1_a_at	CX180970	hypothetical protein	-	1e-5	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	0.90	PtpAffx.127528.1.A1_s_at	CV255049	hypothetical protein	-	1e-10	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	96.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.76417.1.S1_at, orthologous to the query gene, PtpAffx.203617.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	GmaAffx.76417.1.S1_at	At3g13480	-	-	4e+0	At5g56430	F-box family protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	GmaAffx.92103.1.S1_s_at	At3g13480	translationally controlled tumor-like protein	-	6e-28	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.11	14.2	GmaAffx.99.2.A1_s_at	At3g13480	Translationally controlled tumor-like protein	-	3e-1	At3g26670	-	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.8354.1.S1_at	At3g13480	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.05	8.0	GmaAffx.12941.1.S1_at	At3g13480	-	-	2e-14	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.01	3.4	GmaAffx.92317.1.S1_at	At3g13480	-	-	2e-54	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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