CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.203617.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g13480: unknown protein (HF=1e-7)

Module size 6 genes

NF 0.37

%ile 64.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 91.1 0.90 PtpAffx.203617.1.S1_at pmrna7167 hypothetical protein - 1e-7 At3g13480 unknown protein O.I. H.G. S.X.
0.46 73.7 0.90 PtpAffx.4868.3.S1_a_at CV266607 f-box family protein - 3e-1 At1g55000 peptidoglycan-binding LysM domain-containing protein O.I. H.G. S.X.
0.44 71.9 0.90 PtpAffx.135298.1.A1_at CV232578 hypothetical protein - 1e+0 At1g16490 MYB58 (MYB DOMAIN PROTEIN 58) O.I. H.G. S.X.
0.43 69.7 0.92 PtpAffx.73309.1.S1_a_at CV253817 hypothetical protein - 3e-11 At2g22425 peptidase O.I. H.G. S.X.
0.19 32.7 0.91 PtpAffx.4328.1.S1_a_at CX180970 hypothetical protein - 1e-5 At1g56700 pyrrolidone-carboxylate peptidase family protein O.I. H.G. S.X.
0.18 30.8 0.90 PtpAffx.127528.1.A1_s_at CV255049 hypothetical protein - 1e-10 At5g28020 CYSD2 (CYSTEINE SYNTHASE D2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	91.1	0.90	PtpAffx.203617.1.S1_at	pmrna7167	hypothetical protein	-	1e-7	At3g13480	unknown protein	O.I.	H.G.	S.X.
0.46	73.7	0.90	PtpAffx.4868.3.S1_a_at	CV266607	f-box family protein	-	3e-1	At1g55000	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.44	71.9	0.90	PtpAffx.135298.1.A1_at	CV232578	hypothetical protein	-	1e+0	At1g16490	MYB58 (MYB DOMAIN PROTEIN 58)	O.I.	H.G.	S.X.
0.43	69.7	0.92	PtpAffx.73309.1.S1_a_at	CV253817	hypothetical protein	-	3e-11	At2g22425	peptidase	O.I.	H.G.	S.X.
0.19	32.7	0.91	PtpAffx.4328.1.S1_a_at	CX180970	hypothetical protein	-	1e-5	At1g56700	pyrrolidone-carboxylate peptidase family protein	O.I.	H.G.	S.X.
0.18	30.8	0.90	PtpAffx.127528.1.A1_s_at	CV255049	hypothetical protein	-	1e-10	At5g28020	CYSD2 (CYSTEINE SYNTHASE D2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.5 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
4.3 95.8 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1 95.5 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
3.5 94.3 GSM327656 Populus balsamifera_Female_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
3.4 94.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.9 92.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series
2.8 92.1 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.3 89.8 GSM327657 Populus balsamifera_Female_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM327658 Populus balsamifera_Female_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.6 84.5 GSM327402 Populus balsamifera_20071015_Etiolated_seedling_6d_2 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
4.9	96.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.1	95.5	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.5	94.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.4	94.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.8	92.1	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g13480, orthologous to the query gene, PtpAffx.203617.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g13480 820550 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. H.G. S.X.
0.38 46.7 At3g24030 821988 hydroxyethylthiazole kinase family protein F:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPM O.I. H.G. S.X.
0.36 43.6 At1g05030 839340 hexose transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:mitochondrion, integral to membrane, membrane;BMFOPA O.I. H.G. S.X.
0.34 39.8 At3g56840 824851 FAD-dependent oxidoreductase family protein F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV O.I. H.G. S.X.
0.33 38.1 At3g29760 822663 NLI interacting factor (NIF) family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPV O.I. H.G. S.X.
0.32 35.7 At4g18230 827549 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFMOPA O.I. H.G. S.X.
0.30 32.1 At1g75370 843873 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative F:transporter activity;P:transport;C:plasma membrane;MPFO O.I. H.G. S.X.
0.30 32.1 At5g10700 830935 aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase F:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPF O.I. H.G. S.X.
0.29 30.3 At3g12300 820410 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPF O.I. H.G. S.X.
0.28 30.3 At4g10170 826608 synaptobrevin-related family protein F:molecular_function unknown;P:transport, vesicle-mediated transport;C:plasma membrane;P O.I. H.G. S.X.
0.28 30.3 At1g50440 841466 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. H.G. S.X.
0.27 26.2 At1g11090 837650 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVA O.I. H.G. S.X.
0.27 26.2 At2g40410 818634 Ca(2+)-dependent nuclease, putative F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. H.G. S.X.
0.27 26.2 At1g31300 840018 - F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO O.I. H.G. S.X.
0.26 24.4 At5g25360 832608 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.26 24.4 At1g05940 837104 CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. O.I. H.G. S.X.
0.26 24.4 At4g14190 827059 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFA O.I. H.G. S.X.
0.25 22.6 At1g74530 843794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. H.G. S.X.
0.25 22.6 At5g61580 836279 PFK4 (PHOSPHOFRUCTOKINASE 4) F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV O.I. H.G. S.X.
0.25 22.6 At5g52880 835365 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.
0.24 20.7 At1g03430 839506 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. H.G. S.X.
0.24 20.7 At5g15440 831397 EDL1 (EID1-like 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.24 20.7 At4g32750 829411 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.24 20.7 At1g29040 839778 unknown protein F:unknown;P:unknown;C:chloroplast, vacuole;BOP O.I. H.G. S.X.
0.23 19.3 At5g37850 833763 SOS4 (SALT OVERLY SENSITIVE 4) Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+. O.I. H.G. S.X.
0.23 19.3 At3g57230 824890 AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. O.I. H.G. S.X.
0.23 19.3 At5g09670 830826 loricrin-related F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV O.I. H.G. S.X.
0.23 19.3 At5g60750 836196 CAAX amino terminal protease family protein F:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPA O.I. H.G. S.X.
0.23 19.3 At3g22425 821812 IGPD Encodes imidazoleglycerolphosphate dehydratase. O.I. H.G. S.X.
0.22 17.5 At1g80400 844380 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. H.G. S.X.
0.22 17.5 At4g05090 825853 inositol monophosphatase family protein F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMA O.I. H.G. S.X.
0.22 17.5 At1g16460 838216 ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2) encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. O.I. H.G. S.X.
0.22 17.5 At3g04890 819649 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. H.G. S.X.
0.20 14.4 At1g48420 841263 D-CDES (D-CYSTEINE DESULFHYDRASE) Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity. O.I. H.G. S.X.
0.20 14.4 At5g08320 830728 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP O.I. H.G. S.X.
0.20 14.4 At3g42630 823280 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:chloroplast;PO O.I. H.G. S.X.
0.20 14.4 At5g19630 832083 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF O.I. H.G. S.X.
0.20 14.4 At5g63380 836457 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. O.I. H.G. S.X.
0.20 14.4 At5g05610 830444 AL1 (ALFIN-LIKE 1) AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA. O.I. H.G. S.X.
0.20 14.4 At5g47310 834778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.20 14.4 At1g47310 841134 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.20 14.4 At1g26090 839150 unknown protein F:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFP O.I. H.G. S.X.
0.19 12.7 At4g19070 827645 cadmium-responsive protein / cadmium induced protein (AS8) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBA O.I. H.G. S.X.
0.19 12.7 At1g60430 842338 ARPC3 (actin-related protein C3) F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP O.I. H.G. S.X.
0.18 11.4 At3g52760 824442 integral membrane Yip1 family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOP O.I. H.G. S.X.
0.18 11.4 At3g53030 824469 SRPK4 (Ser/Arg-rich protein kinase 4) Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. O.I. H.G. S.X.
0.18 11.4 At3g20620 821609 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.17 10.2 At1g31220 840010 phosphoribosylglycinamide formyltransferase N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide O.I. H.G. S.X.
0.17 10.2 At4g19350 827676 EMB3006 (embryo defective 3006) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF O.I. H.G. S.X.
0.17 10.2 At5g64813 836603 LIP1 (Light Insensitive Period1) The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis. O.I. H.G. S.X.
0.17 10.2 At1g30910 839975 molybdenum cofactor sulfurase family protein F:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BMFOPA O.I. H.G. S.X.
0.17 10.2 At5g49230 834983 HRB1 (HYPERSENSITIVE TO RED AND BLUE) Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction. O.I. H.G. S.X.
0.17 10.2 At2g39840 818571 TOPP4 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. O.I. H.G. S.X.
0.16 8.8 At5g21040 832228 FBX2 (F-BOX PROTEIN 2) Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses. O.I. H.G. S.X.
0.16 8.8 At5g52030 835278 TraB protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP O.I. H.G. S.X.
0.16 8.8 At1g65410 842852 ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11) member of NAP subfamily O.I. H.G. S.X.
0.16 8.8 At1g77740 844110 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPF O.I. H.G. S.X.
0.16 8.8 At1g05430 837044 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. H.G. S.X.
0.16 8.8 At3g26000 822197 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. H.G. S.X.
0.16 8.8 At5g41480 834149 GLA1 (GLOBULAR ARREST1) Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis. O.I. H.G. S.X.
0.15 7.8 At2g26600 817201 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POF O.I. H.G. S.X.
0.15 7.8 At1g31940 840084 unknown protein F:unknown;P:unknown;C:plasma membrane;P O.I. H.G. S.X.
0.15 7.8 At1g50170 841439 ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B) encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis O.I. H.G. S.X.
0.15 7.8 At3g26630 822275 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM O.I. H.G. S.X.
0.14 6.8 At4g05000 825842 VPS28-2 F:transporter activity;P:transport;C:ESCRT I complex;MFPO O.I. H.G. S.X.
0.14 6.8 At5g21070 832231 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP O.I. H.G. S.X.
0.14 6.8 At4g10180 826609 DET1 (DE-ETIOLATED 1) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. O.I. H.G. S.X.
0.13 5.8 At1g12820 837838 AFB3 (AUXIN SIGNALING F-BOX 3) F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOB O.I. H.G. S.X.
0.13 5.8 At5g01960 831906 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MOPFV O.I. H.G. S.X.
0.13 5.8 At1g69980 843335 unknown protein F:unknown;P:unknown;C:endomembrane system;P O.I. H.G. S.X.
0.13 5.8 At1g31020 839988 ATO2 (Arabidopsis thioredoxin o2) F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAV O.I. H.G. S.X.
0.12 4.9 At1g10940 837637 SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4) Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. O.I. H.G. S.X.
0.12 4.9 At2g29900 817540 presenilin family protein F:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPA O.I. H.G. S.X.
0.12 4.9 At3g58010 824970 unknown protein F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO O.I. H.G. S.X.
0.11 4.1 At3g53090 824475 UPL7 encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. O.I. H.G. S.X.
0.10 3.4 At1g25420 839128 unknown protein F:unknown;P:biological_process unknown;C:unknown;PMFO O.I. H.G. S.X.
0.10 3.4 At2g20725 816602 CAAX amino terminal protease family protein F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA O.I. H.G. S.X.
0.10 3.4 At5g03910 830269 ATATH12 member of ATH subfamily O.I. H.G. S.X.
0.09 2.8 At5g18190 831937 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA O.I. H.G. S.X.
0.09 2.8 At2g39170 818502 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. H.G. S.X.
0.07 1.9 At1g80500 844389 - F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	O.I.	H.G.	S.X.
1.00	100.0	At3g13480	820550	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	H.G.	S.X.
0.38	46.7	At3g24030	821988	hydroxyethylthiazole kinase family protein	F:catalytic activity, hydroxyethylthiazole kinase activity;P:thiamin biosynthetic process;C:cellular_component unknown;BOFAPM	O.I.	H.G.	S.X.
0.36	43.6	At1g05030	839340	hexose transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:mitochondrion, integral to membrane, membrane;BMFOPA	O.I.	H.G.	S.X.
0.34	39.8	At3g56840	824851	FAD-dependent oxidoreductase family protein	F:oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;BOMFAPV	O.I.	H.G.	S.X.
0.33	38.1	At3g29760	822663	NLI interacting factor (NIF) family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPV	O.I.	H.G.	S.X.
0.32	35.7	At4g18230	827549	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFMOPA	O.I.	H.G.	S.X.
0.30	32.1	At1g75370	843873	SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative	F:transporter activity;P:transport;C:plasma membrane;MPFO	O.I.	H.G.	S.X.
0.30	32.1	At5g10700	830935	aminoacyl-tRNA hydrolase/ protein tyrosine phosphatase	F:aminoacyl-tRNA hydrolase activity, protein tyrosine phosphatase activity;P:protein amino acid dephosphorylation, translation;C:unknown;MOPF	O.I.	H.G.	S.X.
0.29	30.3	At3g12300	820410	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOPF	O.I.	H.G.	S.X.
0.28	30.3	At4g10170	826608	synaptobrevin-related family protein	F:molecular_function unknown;P:transport, vesicle-mediated transport;C:plasma membrane;P	O.I.	H.G.	S.X.
0.28	30.3	At1g50440	841466	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	H.G.	S.X.
0.27	26.2	At1g11090	837650	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;BOPMFVA	O.I.	H.G.	S.X.
0.27	26.2	At2g40410	818634	Ca(2+)-dependent nuclease, putative	F:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.27	26.2	At1g31300	840018	-	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;MFPO	O.I.	H.G.	S.X.
0.26	24.4	At5g25360	832608	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.26	24.4	At1g05940	837104	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	O.I.	H.G.	S.X.
0.26	24.4	At4g14190	827059	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFA	O.I.	H.G.	S.X.
0.25	22.6	At1g74530	843794	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	H.G.	S.X.
0.25	22.6	At5g61580	836279	PFK4 (PHOSPHOFRUCTOKINASE 4)	F:6-phosphofructokinase activity;P:glycolysis;C:6-phosphofructokinase complex, chloroplast;BOMPFAV	O.I.	H.G.	S.X.
0.25	22.6	At5g52880	835365	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	H.G.	S.X.
0.24	20.7	At1g03430	839506	AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5)	Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	H.G.	S.X.
0.24	20.7	At5g15440	831397	EDL1 (EID1-like 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.24	20.7	At4g32750	829411	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.24	20.7	At1g29040	839778	unknown protein	F:unknown;P:unknown;C:chloroplast, vacuole;BOP	O.I.	H.G.	S.X.
0.23	19.3	At5g37850	833763	SOS4 (SALT OVERLY SENSITIVE 4)	Encodes a pyridoxal kinase required for root hair development. Mutants are hypersensitive to Na+, K+ and Li+.	O.I.	H.G.	S.X.
0.23	19.3	At3g57230	824890	AGL16 (AGAMOUS-LIKE 16)	MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes.	O.I.	H.G.	S.X.
0.23	19.3	At5g09670	830826	loricrin-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV	O.I.	H.G.	S.X.
0.23	19.3	At5g60750	836196	CAAX amino terminal protease family protein	F:endopeptidase activity;P:proteolysis;C:chloroplast, membrane;BOPA	O.I.	H.G.	S.X.
0.23	19.3	At3g22425	821812	IGPD	Encodes imidazoleglycerolphosphate dehydratase.	O.I.	H.G.	S.X.
0.22	17.5	At1g80400	844380	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	H.G.	S.X.
0.22	17.5	At4g05090	825853	inositol monophosphatase family protein	F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMA	O.I.	H.G.	S.X.
0.22	17.5	At1g16460	838216	ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)	encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase.	O.I.	H.G.	S.X.
0.22	17.5	At3g04890	819649	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	H.G.	S.X.
0.20	14.4	At1g48420	841263	D-CDES (D-CYSTEINE DESULFHYDRASE)	Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity.	O.I.	H.G.	S.X.
0.20	14.4	At5g08320	830728	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOP	O.I.	H.G.	S.X.
0.20	14.4	At3g42630	823280	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:chloroplast;PO	O.I.	H.G.	S.X.
0.20	14.4	At5g19630	832083	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOPAF	O.I.	H.G.	S.X.
0.20	14.4	At5g63380	836457	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At5g63380 preferentially activates fatty acids with increased chain length (C9:0 to C8:0) and thus shares characteristics with long-chain fatty acyl-CoA synthases. Also able to catalyze the conversion of OPDA to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis.	O.I.	H.G.	S.X.
0.20	14.4	At5g05610	830444	AL1 (ALFIN-LIKE 1)	AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	O.I.	H.G.	S.X.
0.20	14.4	At5g47310	834778	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	H.G.	S.X.
0.20	14.4	At1g47310	841134	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.20	14.4	At1g26090	839150	unknown protein	F:unknown;P:unknown;C:chloroplast, plastoglobule;BMOAFP	O.I.	H.G.	S.X.
0.19	12.7	At4g19070	827645	cadmium-responsive protein / cadmium induced protein (AS8)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;VPOMBA	O.I.	H.G.	S.X.
0.19	12.7	At1g60430	842338	ARPC3 (actin-related protein C3)	F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOP	O.I.	H.G.	S.X.
0.18	11.4	At3g52760	824442	integral membrane Yip1 family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOP	O.I.	H.G.	S.X.
0.18	11.4	At3g53030	824469	SRPK4 (Ser/Arg-rich protein kinase 4)	Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.	O.I.	H.G.	S.X.
0.18	11.4	At3g20620	821609	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.17	10.2	At1g31220	840010	phosphoribosylglycinamide formyltransferase	N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide	O.I.	H.G.	S.X.
0.17	10.2	At4g19350	827676	EMB3006 (embryo defective 3006)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PMF	O.I.	H.G.	S.X.
0.17	10.2	At5g64813	836603	LIP1 (Light Insensitive Period1)	The LIP1 gene encodes a small GTPase that influences the light input pathway of the plant circadian network. An MBP:LIP1 fusion protein has GTP hydrolyzing abilities in vitro. In plants, LIP1 seems to play a negative role in regulating circadian period that can be suppressed by light. LIP1 also seems to negatively affect light-pulse-dependent resetting of the clock, especially during the first portion of the subjective evening. LIP1 expression levels are not significantly affected by the circadian clock in seedlings grown under LL conditions. The levels of the YFP:LIP1 protein expressed under the control of the 35S promoter, shows a low amplitude variation, with protein levels peaking near the beginning of subjective night under LL conditions. In hypocotyl epidermal cells of dark and light-grown seedlings, a YFP:LIP1 fusion protein can be seen in the cytoplasm and the nucleus, and does not cluster in nuclear speckles. LIP1 may also be involved in photomorphogenesis.	O.I.	H.G.	S.X.
0.17	10.2	At1g30910	839975	molybdenum cofactor sulfurase family protein	F:molybdenum ion binding, Mo-molybdopterin cofactor sulfurase activity, pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BMFOPA	O.I.	H.G.	S.X.
0.17	10.2	At5g49230	834983	HRB1 (HYPERSENSITIVE TO RED AND BLUE)	Identified in a screen for mutations hypersensitive to red and blue light. Mutants have shorter hypocotyls. Encodes a nuclear localized protein with similarity to drought induced proteins. Contains a ZZ zinc finger domain which is thought to mediate protein-protein interactions.May be involved in red and blue light signal transduction.	O.I.	H.G.	S.X.
0.17	10.2	At2g39840	818571	TOPP4	Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.	O.I.	H.G.	S.X.
0.16	8.8	At5g21040	832228	FBX2 (F-BOX PROTEIN 2)	Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.	O.I.	H.G.	S.X.
0.16	8.8	At5g52030	835278	TraB protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOAP	O.I.	H.G.	S.X.
0.16	8.8	At1g65410	842852	ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)	member of NAP subfamily	O.I.	H.G.	S.X.
0.16	8.8	At1g77740	844110	1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative	F:1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding;P:phosphatidylinositol metabolic process;C:cellular_component unknown;OMBPF	O.I.	H.G.	S.X.
0.16	8.8	At1g05430	837044	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	H.G.	S.X.
0.16	8.8	At3g26000	822197	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	H.G.	S.X.
0.16	8.8	At5g41480	834149	GLA1 (GLOBULAR ARREST1)	Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.	O.I.	H.G.	S.X.
0.15	7.8	At2g26600	817201	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to membrane;POF	O.I.	H.G.	S.X.
0.15	7.8	At1g31940	840084	unknown protein	F:unknown;P:unknown;C:plasma membrane;P	O.I.	H.G.	S.X.
0.15	7.8	At1g50170	841439	ATSIRB (ARABIDOPSIS THALIANA SIROHYDROCHLORIN FERROCHELATASE B)	encodes sirohydrochlorin ferrochelatase catalyzing the last step of the siroheme biosynthesis	O.I.	H.G.	S.X.
0.15	7.8	At3g26630	822275	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFM	O.I.	H.G.	S.X.
0.14	6.8	At4g05000	825842	VPS28-2	F:transporter activity;P:transport;C:ESCRT I complex;MFPO	O.I.	H.G.	S.X.
0.14	6.8	At5g21070	832231	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	H.G.	S.X.
0.14	6.8	At4g10180	826609	DET1 (DE-ETIOLATED 1)	Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.	O.I.	H.G.	S.X.
0.13	5.8	At1g12820	837838	AFB3 (AUXIN SIGNALING F-BOX 3)	F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOB	O.I.	H.G.	S.X.
0.13	5.8	At5g01960	831906	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MOPFV	O.I.	H.G.	S.X.
0.13	5.8	At1g69980	843335	unknown protein	F:unknown;P:unknown;C:endomembrane system;P	O.I.	H.G.	S.X.
0.13	5.8	At1g31020	839988	ATO2 (Arabidopsis thioredoxin o2)	F:unknown;P:cell redox homeostasis;C:unknown;BOMPFAV	O.I.	H.G.	S.X.
0.12	4.9	At1g10940	837637	SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)	Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.	O.I.	H.G.	S.X.
0.12	4.9	At2g29900	817540	presenilin family protein	F:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPA	O.I.	H.G.	S.X.
0.12	4.9	At3g58010	824970	unknown protein	F:unknown;P:biological_process unknown;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast, plastoglobule;PFO	O.I.	H.G.	S.X.
0.11	4.1	At3g53090	824475	UPL7	encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.	O.I.	H.G.	S.X.
0.10	3.4	At1g25420	839128	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PMFO	O.I.	H.G.	S.X.
0.10	3.4	At2g20725	816602	CAAX amino terminal protease family protein	F:molecular_function unknown;P:proteolysis;C:chloroplast, membrane;BOPA	O.I.	H.G.	S.X.
0.10	3.4	At5g03910	830269	ATATH12	member of ATH subfamily	O.I.	H.G.	S.X.
0.09	2.8	At5g18190	831937	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVA	O.I.	H.G.	S.X.
0.09	2.8	At2g39170	818502	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	H.G.	S.X.
0.07	1.9	At1g80500	844389	-	F:molecular_function unknown;P:transport, ER to Golgi vesicle-mediated transport;C:intracellular;MFOP	O.I.	H.G.	S.X.

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Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	PtpAffx.203617.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g13480: unknown protein (HF=1e-7)
Module size	6 genes
NF	0.37
%ile	64.3

Co-expression analysis

Gene ID PtpAffx.203617.1.S1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g13480: unknown protein (HF=1e-7) Module size 6 genes NF 0.37 %ile 64.3

Co-expressed genes

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Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Glycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.203617.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g13480: unknown protein (HF=1e-7)

Module size 6 genes

NF 0.37

%ile 64.3

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays