Co-expression analysis

Gene ID	PtpAffx.203561.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g27890: NQR (NADPH:QUINONE OXIDOREDUCTASE) (HF=2e-21)
Module size	9 genes
NF	0.48
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.87	PtpAffx.203561.1.S1_at	pmrna7069	hypothetical protein	-	2e-21	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.90	PtpAffx.216835.1.S1_at	pmrna31873	hypothetical protein	-	3e-9	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.91	PtpAffx.127968.1.A1_at	CV237300	hypothetical protein	-	1e-1	At5g26622	beta-galactosidase	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.90	PtpAffx.70645.1.S1_at	CV280156	cinnamyl alcohol dehydrogenase-like protein /// cinnamyl alcohol dehydrogenase-like protein	-	3e-6	At4g37980	ELI3-1 (ELICITOR-ACTIVATED GENE 3-1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.43	69.7	0.90	PtpAffx.201977.1.S1_at	pmrna3949	hypothetical protein	-	7e-1	At1g05450	protease inhibitor/seed storage/lipid transfer protein (LTP)-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.56585.1.S1_at	CV259403	hypothetical protein	-	9e-1	At3g57072	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	0.89	PtpAffx.209092.1.S1_at	pmrna17982	hypothetical protein	-	7e-1	At3g54940	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.90	PtpAffx.249.682.A1_at	CV262269	hypothetical protein	-	2e-1	At1g70440	SRO3 (SIMILAR TO RCD ONE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.89	PtpAffx.120741.1.A1_at	CV267327	hypothetical protein	-	3e-5	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
5.0	96.6	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.3	95.8	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.2	93.5	GSM372095	Clone3200_LPI5_N-_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
3.1	93.2	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.0	92.9	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM328066	Populus x canescens leaf control_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328062	Populus x canescens leaf control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage