Co-expression analysis

Gene ID	PtpAffx.203528.1.S1_at
Gene name	cytokinin oxidase
Homology with Arabidopsis	Similar to At3g63440: CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6) (HF=3e-28)
Module size	7 genes
NF	0.12
%ile	24.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	75.4	0.87	PtpAffx.203528.1.S1_at	pmrna7012	cytokinin oxidase	-	3e-28	At3g63440	CKX6 (CYTOKININ OXIDASE/DEHYDROGENASE 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.89	PtpAffx.203205.1.S1_at	pmrna6353	hypothetical protein	-	8e-12	At4g22900	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.88	PtpAffx.209197.1.S1_at	pmrna18189	ZIP transporter	-	5e-1	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	0.87	PtpAffx.201664.1.S1_at	pmrna3318	hypothetical protein	-	5e-1	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.88	PtpAffx.224833.1.S1_s_at	pmrna43712	tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein	-	5e-5	At1g72890	disease resistance protein (TIR-NBS class), putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.88	Ptp.6639.1.S1_at	DN488065	hypothetical protein	-	2e-3	At5g54790	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.87	Ptp.7295.1.S1_at	DN492619	hypothetical protein	-	9e-12	At4g17220	ATMAP70-5 (microtubule-associated proteins 70-5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.5	90.9	GSM362887	Clone1979_LPI5_N+_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.5	90.9	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM244437	Mmd infected tissue, biological rep2	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
2.1	88.6	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.9	87.2	GSM244436	Mmd infected tissue, biological rep1	GSE9673	Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungi
1.8	86.4	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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