Co-expression analysis

Gene ID	PtpAffx.203436.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g28710: zinc finger (C2H2 type) family protein (HF=3e+0)
Module size	6 genes
NF	0.15
%ile	28.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	0.95	PtpAffx.203436.1.S1_at	pmrna6850	hypothetical protein	-	3e+0	At2g28710	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	0.95	Ptp.7035.1.S1_at	CV253765	hypothetical protein	-	1e-25	At5g11340	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	0.96	PtpAffx.52144.1.S1_at	CV235587	-	-	1e-11	At2g38740	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.95	PtpAffx.224739.1.S1_at	pmrna43556	hypothetical protein	-	1e-15	At5g45650	subtilase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	0.95	PtpAffx.128139.1.A1_at	CV262185	hypothetical protein	-	3e-14	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	0.95	PtpAffx.50248.1.S1_s_at	DN500676	hypothetical protein	-	5e-1	At5g48515	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	99.2	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
5.2	96.8	GSM328558	Populus x canescens root control_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328292	Populus x canescens root control_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.1	95.5	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.8	94.9	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327358	Populus balsamifera_20071015_Seedling_continuous_light_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM327402	Populus balsamifera_20071015_Etiolated_seedling_6d_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM328561	Populus x canescens root control_rep_12	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage