Co-expression analysis

Gene ID PtpAffx.203341.1.S1_s_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At5g47220: ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2) (HF=3e-7)
Module size 8 genes
NF 0.45
%ile 74.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5279.40.90PtpAffx.203341.1.S1_s_atpmrna6649AP2/ERF domain-containing transcription factor-3e-7At5g47220ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)O.I.H.G.S.X.
0.5480.80.92Ptp.3127.1.S1_s_atAJ777838hypothetical protein-3e-52At4g26270PFK3 (PHOSPHOFRUCTOKINASE 3)O.I.H.G.S.X.
0.4471.90.92PtpAffx.5219.1.A1_s_atCN523722hypothetical protein-5e-13At4g29220PFK1 (PHOSPHOFRUCTOKINASE 1)O.I.H.G.S.X.
0.4268.60.92PtpAffx.35909.1.S1_atCV244075hypothetical protein-3e-2At3g55970oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4268.60.94PtpAffx.207242.1.S1_atpmrna14353hypothetical protein-2e-20At4g35470leucine-rich repeat family proteinO.I.H.G.S.X.
0.4067.00.94PtpAffx.31782.2.A1_a_atCV272415gtp-binding protein SAR1-4e-47At1g09180ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)O.I.H.G.S.X.
0.4067.00.95PtpAffx.218771.1.S1_s_atpmrna34498jumonji domain protein /// hypothetical protein-5e-26At1g30810transcription factorO.I.H.G.S.X.
0.2747.10.92PtpAffx.85773.1.S1_atCK107579white-brown-complex ABC transporter family-6e-17At1g53390ATPase, coupled to transmembrane movement of substancesO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.594.3GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.393.7GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.590.9GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
1.886.4GSM328565Populus x canescens root hypoxia_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.785.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage