CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.203194.1.S1_s_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g45430: DNA-binding protein-related (HF=3e-5)

Module size 6 genes

NF 0.69

%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 92.6 0.96 PtpAffx.203194.1.S1_s_at pmrna6331 hypothetical protein - 3e-5 At2g45430 DNA-binding protein-related O.I. H.G. S.X.
0.83 97.0 0.96 Ptp.4965.1.S1_x_at AY594295.1 hypothetical protein - 3e-2 At3g09390 MT2A (METALLOTHIONEIN 2A) O.I. H.G. S.X.
0.71 92.6 0.96 PtpAffx.618.2.S1_a_at CV246676 - - 5e-3 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.
0.57 84.2 0.96 PtpAffx.202166.1.S1_at pmrna4333 hypothetical protein - 2e-12 At2g45430 DNA-binding protein-related O.I. H.G. S.X.
0.57 84.2 0.96 Ptp.5748.1.S1_s_at CX657082 hypothetical protein - 3e-13 At1g62510 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.50 78.6 0.96 PtpAffx.618.2.S1_x_at CV246676 - - 5e-3 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.9 95.1 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2 93.5 GSM328281 Populus x canescens root control_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.2 93.5 GSM328566 Populus x canescens root hypoxia_rep_08 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.1 93.2 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
3.0 92.9 GSM328277 Populus x canescens root control_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328563 Populus x canescens root hypoxia_rep_05 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.9 92.5 GSM328534 Populus x canescens root control_rep_07 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.8 92.1 GSM328559 Populus x canescens root control_rep_10 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.7 91.8 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.5 90.9 GSM328560 Populus x canescens root control_rep_11 GSE13109 Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the grape gene, 1617526_s_at, orthologous to the query gene, PtpAffx.203194.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.46 66.5 1617526_s_at At2g45430 hypothetical protein LOC100250396 - 8e-1 At2g10920 unknown protein O.I. H.G. S.X.
0.77 92.3 1621559_at At2g45430 hypothetical protein LOC100262734 - 3e-51 At3g28860 ABCB19 O.I. H.G. S.X.
0.75 91.3 1619231_at At2g45430 hypothetical protein LOC100248953 - 2e+0 At3g60440 - O.I. H.G. S.X.
0.61 83.2 1614094_at At2g45430 hypothetical protein LOC100255834 - 6e-43 At4g08150 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA) O.I. H.G. S.X.
0.56 79.4 1609418_s_at At2g45430 hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538 - 4e+0 At5g35375 unknown protein O.I. H.G. S.X.
0.53 75.2 1613074_at At2g45430 similar to PDF - 1e-1 At2g42840 PDF1 (PROTODERMAL FACTOR 1) O.I. H.G. S.X.
0.48 68.8 1607851_at At2g45430 hypothetical protein LOC100266538 - 9e-2 At1g04660 glycine-rich protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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