Co-expression analysis

Gene ID	PtpAffx.203194.1.S1_s_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g45430: DNA-binding protein-related (HF=3e-5)
Module size	6 genes
NF	0.69
%ile	95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	92.6	0.96	PtpAffx.203194.1.S1_s_at	pmrna6331	hypothetical protein	-	3e-5	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.96	Ptp.4965.1.S1_x_at	AY594295.1	hypothetical protein	-	3e-2	At3g09390	MT2A (METALLOTHIONEIN 2A)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.96	PtpAffx.618.2.S1_a_at	CV246676	-	-	5e-3	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	PtpAffx.202166.1.S1_at	pmrna4333	hypothetical protein	-	2e-12	At2g45430	DNA-binding protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	0.96	Ptp.5748.1.S1_s_at	CX657082	hypothetical protein	-	3e-13	At1g62510	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.96	PtpAffx.618.2.S1_x_at	CV246676	-	-	5e-3	At5g02380	MT2B (METALLOTHIONEIN 2B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.9	95.1	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
3.2	93.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.2	93.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.1	93.2	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
3.0	92.9	GSM328277	Populus x canescens root control_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328563	Populus x canescens root hypoxia_rep_05	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.9	92.5	GSM328534	Populus x canescens root control_rep_07	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.8	92.1	GSM328559	Populus x canescens root control_rep_10	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.7	91.8	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.5	90.9	GSM328560	Populus x canescens root control_rep_11	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

A co-expression module including the barley gene, Contig19277_at, orthologous to the query gene, PtpAffx.203194.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig19277_at	At2g45430	-	-	4e-2	At2g31370	bZIP transcription factor (POSF21)	O.I.	H.G.	S.X.	Please select
0.83	94.0	Contig14677_at	At2g45430	-	-	2e-1	At1g22220	F-box family protein	O.I.	H.G.	S.X.	Please select
0.80	92.5	Contig12230_s_at	At2g45430	-	-	9e-12	At3g21700	SGP2	O.I.	H.G.	S.X.	Please select
0.59	75.8	Contig12411_s_at	At2g45430	-	-	1e+0	At4g28190	ULT1 (ULTRAPETALA1)	O.I.	H.G.	S.X.	Please select
0.18	18.2	Contig6455_at	At2g45430	-	-	7e-1	At2g36410	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig10095_at	At2g45430	-	-	5e-4	At2g20920	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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