Co-expression analysis

Gene ID PtpAffx.203194.1.S1_s_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g45430: DNA-binding protein-related (HF=3e-5)
Module size 6 genes
NF 0.69
%ile 95.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7192.60.96PtpAffx.203194.1.S1_s_atpmrna6331hypothetical protein-3e-5At2g45430DNA-binding protein-relatedO.I.H.G.S.X.
0.8397.00.96Ptp.4965.1.S1_x_atAY594295.1hypothetical protein-3e-2At3g09390MT2A (METALLOTHIONEIN 2A)O.I.H.G.S.X.
0.7192.60.96PtpAffx.618.2.S1_a_atCV246676--5e-3At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.
0.5784.20.96PtpAffx.202166.1.S1_atpmrna4333hypothetical protein-2e-12At2g45430DNA-binding protein-relatedO.I.H.G.S.X.
0.5784.20.96Ptp.5748.1.S1_s_atCX657082hypothetical protein-3e-13At1g62510protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5078.60.96PtpAffx.618.2.S1_x_atCV246676--5e-3At5g02380MT2B (METALLOTHIONEIN 2B)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.995.1GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.293.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.293.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.193.2GSM328533Populus x canescens root hypoxia_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
3.092.9GSM328277Populus x canescens root control_rep_01GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328563Populus x canescens root hypoxia_rep_05GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.992.5GSM328534Populus x canescens root control_rep_07GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.892.1GSM328559Populus x canescens root control_rep_10GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.791.8GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.590.9GSM328560Populus x canescens root control_rep_11GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, Gma.11528.2.S1_a_at, orthologous to the query gene, PtpAffx.203194.1.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5878.8Gma.11528.2.S1_a_atAt2g45430--3e-1Atmg00750-O.I.H.G.S.X.
0.4867.7GmaAffx.78129.1.S1_atAt2g45430--3e-1At2g16210transcriptional factor B3 family proteinO.I.H.G.S.X.
0.3548.6GmaAffx.19218.1.S1_atAt2g45430--1e-2At4g28790basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3346.1GmaAffx.66870.1.S1_atAt2g45430--2e-5At3g06980DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.3243.7GmaAffx.85918.2.S1_atAt2g45430--6e-14At1g10830sodium symporter-relatedO.I.H.G.S.X.
0.3243.7Gma.4711.3.S1_atAt2g45430--1e-9At5g59610DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.3040.4GmaAffx.63538.1.S1_atAt2g45430--4e+0At4g33660unknown proteinO.I.H.G.S.X.
0.2532.6GmaAffx.74553.1.S1_atAt2g45430--1e+0At3g62400unknown proteinO.I.H.G.S.X.
0.2329.9Gma.2654.2.S1_a_atAt2g45430--2e-2At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.1923.7GmaAffx.61778.1.S1_atAt2g45430--5e+0At2g27250CLV3 (CLAVATA3)O.I.H.G.S.X.
0.1923.7GmaAffx.22630.1.S1_atAt2g45430--2e-1At5g49010SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)O.I.H.G.S.X.
0.1923.7Gma.16537.2.S1_atAt2g45430--1e-49At3g05350aminopeptidase/ hydrolaseO.I.H.G.S.X.
0.1316.3GmaAffx.85099.1.S1_atAt2g45430--4e-6At1g29540unknown proteinO.I.H.G.S.X.
0.047.0GmaAffx.31781.1.S1_atAt2g45430--8e-1At4g31870ATGPX7 (glutathione peroxidase 7)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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