Co-expression analysis

Gene ID PtpAffx.203177.1.S1_x_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At1g62710: BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) (HF=5e-27)
Module size 19 genes
NF 0.41
%ile 69.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7091.70.81PtpAffx.203177.1.S1_x_atpmrna6297hypothetical protein-5e-27At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)O.I.H.G.S.X.
0.6187.00.90PtpAffx.215867.1.S1_atpmrna30303hypothetical protein-9e-8At3g05900neurofilament protein-relatedO.I.H.G.S.X.
0.5582.20.87PtpAffx.74706.1.A1_atCV243425hypothetical protein-7e-30At3g17210HS1 (HEAT STABLE PROTEIN 1)O.I.H.G.S.X.
0.5279.40.91Ptp.6302.1.A1_atCV242506--1e+0At5g38344transmembrane receptorO.I.H.G.S.X.
0.5078.60.88PtpAffx.249.19.A1_x_atCK320862--2e+0At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)O.I.H.G.S.X.
0.4774.60.88PtpAffx.249.19.A1_atCK320862--2e+0At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)O.I.H.G.S.X.
0.4572.30.90PtpAffx.211754.1.S1_atpmrna23032hypothetical protein-4e-62At4g02350exocyst complex subunit Sec15-like family proteinO.I.H.G.S.X.
0.4268.60.85PtpAffx.225060.1.S1_atpmrna44141hypothetical protein-3e-24At1g15520PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)O.I.H.G.S.X.
0.4067.00.90PtpAffx.13681.2.S1_atCV268082hypothetical protein-1e+1At5g65420CYCD4O.I.H.G.S.X.
0.3863.70.93PtpAffx.10869.2.S1_a_atCV242416f-box family protein-6e-11At4g00755F-box family proteinO.I.H.G.S.X.
0.3863.70.91PtpAffx.204829.1.S1_atpmrna9525hypothetical protein-8e-35At3g52120SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinO.I.H.G.S.X.
0.3559.70.91PtpAffx.95107.1.A1_s_atCV274898hypothetical protein-1e+0At5g67490unknown proteinO.I.H.G.S.X.
0.3255.20.90PtpAffx.56787.1.S1_atCV252270--6e+0At5g28770BZO2H3O.I.H.G.S.X.
0.3255.20.93PtpAffx.17833.1.A1_atCV242091hypothetical protein-5e-1At3g43430zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3052.00.90PtpAffx.6991.1.A1_a_atCV247916hypothetical protein-2e-2At2g27730unknown proteinO.I.H.G.S.X.
0.2645.20.89PtpAffx.127406.1.A1_atCV258747hypothetical protein-2e-3At5g64640pectinesterase family proteinO.I.H.G.S.X.
0.2238.30.94PtpAffx.67788.1.A1_atBP931301--8e-2At2g36835unknown proteinO.I.H.G.S.X.
0.2034.60.88PtpAffx.46346.2.S1_atCV269024hypothetical protein-8e-9At2g39220PLP6 (PATATIN-LIKE PROTEIN 6)O.I.H.G.S.X.
0.1729.10.94PtpAffx.101944.1.A1_atCV244098hypothetical protein-2e+0At4g33940zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.594.3GSM327412Populus balsamifera_1006_differentiating_xylem_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.494.0GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.590.9GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
2.490.4GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM362887Clone1979_LPI5_N+_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.088.0GSM328561Populus x canescens root control_rep_12GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
1.987.2GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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