Co-expression analysis

Gene ID	PtpAffx.203077.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At4g08330: unknown protein (HF=2e-1)
Module size	7 genes
NF	0.36
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	0.87	PtpAffx.203077.1.S1_at	pmrna6091	hypothetical protein	-	2e-1	At4g08330	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	0.89	PtpAffx.212682.1.S1_at	pmrna24799	hypothetical protein	-	1e-111	At1g18370	HIK (HINKEL)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.41	67.7	0.87	PtpAffx.49543.1.A1_at	CV281092	-	-	8e-18	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.91	PtpAffx.206293.1.S1_at	pmrna12477	hypothetical protein	-	4e-2	At2g37960	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.92	PtpAffx.200425.1.S1_at	pmrna852	hypothetical protein	-	8e-27	At1g63640	kinesin motor protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.92	PtpAffx.212682.1.S1_x_at	pmrna24799	hypothetical protein	-	1e-111	At1g18370	HIK (HINKEL)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	0.89	PtpAffx.27019.1.S1_at	CV269589	hypothetical protein	-	1e-13	At5g15070	acid phosphatase/ oxidoreductase/ transition metal ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.1	96.8	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
4.8	96.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.8	94.9	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM334224	Populus balsamifera_1006_mature_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.6	94.5	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM328105	Populus x canescens leaf hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.3	89.8	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.2	89.3	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage