Co-expression analysis

Gene ID	PtpAffx.203035.1.S1_at
Gene name	AP2/ERF domain-containing transcription factor
Homology with Arabidopsis	Similar to At2g47520: AP2 domain-containing transcription factor, putative (HF=3e-2)
Module size	25 genes
NF	0.77
%ile	98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	0.90	PtpAffx.203035.1.S1_at	pmrna6011	AP2/ERF domain-containing transcription factor	-	3e-2	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.94	99.6	0.91	PtpAffx.9959.1.A1_at	BP936055	hypothetical protein	-	1e+0	At3g59450	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.90	97.9	0.89	PtpAffx.8577.2.A1_at	CV256116	-	-	2e-31	At4g08950	EXO (EXORDIUM)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.87	97.5	0.91	PtpAffx.119343.2.A1_a_at	BP936124	hypothetical protein	-	4e-6	At4g29780	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.86	97.4	0.93	PtpAffx.8810.1.S1_at	CK096534	AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor	-	2e-34	At1g21910	AP2 domain-containing transcription factor family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.89	PtpAffx.158361.1.S1_at	CA822309	-	-	1e+0	At3g47510	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.91	PtpAffx.204670.1.S1_at	pmrna9194	AP2/ERF domain-containing transcription factor	-	7e-9	At1g43160	RAP2.6 (related to AP2 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.85	97.2	0.88	PtpAffx.93687.1.S1_at	BP927882	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.84	97.1	0.90	PtpAffx.54562.1.A1_at	CV243605	AP2/ERF domain-containing transcription factor	-	8e-31	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.88	PtpAffx.215817.1.S1_at	pmrna30229	AP2/ERF domain-containing transcription factor	-	8e-7	At3g23240	ERF1 (ETHYLENE RESPONSE FACTOR 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	0.92	PtpAffx.106356.1.S1_at	CX660277	AP2/ERF domain-containing transcription factor	-	5e+0	At3g15050	IQD10 (IQ-domain 10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.81	96.1	0.92	PtpAffx.30602.1.A1_at	CV268363	hypothetical protein	-	1e-4	At5g17800	AtMYB56 (myb domain protein 56)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.79	95.3	0.89	PtpAffx.221103.1.S1_at	pmrna37700	-	-	7e-5	At2g44840	ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.90	PtpAffx.129941.1.S1_s_at	CA823700	hypothetical protein	-	7e-10	At2g31180	MYB14 (MYB DOMAIN PROTEIN 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.90	PtpAffx.93687.1.S1_s_at	BP927882	AP2/ERF domain-containing transcription factor	-	1e+0	At1g71450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	0.90	PtpAffx.59348.1.S1_at	CA928346	hypothetical protein	-	3e-1	At5g08370	AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.76	94.3	0.91	PtpAffx.35610.1.A1_at	CV257792	hypothetical protein	-	1e-13	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.89	PtpAffx.204806.1.S1_at	pmrna9474	hypothetical protein	-	2e-2	At5g12340	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.68	91.3	0.90	PtpAffx.106356.1.S1_s_at	CX660277	AP2/ERF domain-containing transcription factor	-	9e-2	At5g19800	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.66	88.7	0.92	Ptp.3396.1.S1_at	DN485474	hypothetical protein	-	1e-5	At3g50310	MAPKKK20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.90	Ptp.4398.2.A1_at	DN489197	hypothetical protein	-	8e-4	At1g14860	atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.64	88.4	0.92	Ptp.3396.1.S1_s_at	DN485474	hypothetical protein	-	1e-5	At3g50310	MAPKKK20	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	0.92	Ptp.7458.1.S1_at	BU865438	-	-	5e-9	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	0.89	PtpAffx.119343.1.A1_a_at	BP933189	hypothetical protein	-	4e-10	At5g12010	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	0.91	PtpAffx.201811.1.S1_at	pmrna3608	hypothetical protein	-	2e-7	At5g64660	U-box domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.3	98.5	GSM328566	Populus x canescens root hypoxia_rep_08	GSE13109	Effect of hypoxia on gene expression in Grey poplar
8.2	98.5	GSM328483	Populus x canescens root control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
4.0	95.3	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.7	85.5	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327411	Populus balsamifera_1006_differentiating_xylem_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.5	83.5	GSM328281	Populus x canescens root control_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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