Co-expression analysis

Gene ID PtpAffx.203035.1.S1_at
Gene name AP2/ERF domain-containing transcription factor
Homology with ArabidopsisSimilar to At2g47520: AP2 domain-containing transcription factor, putative (HF=3e-2)
Module size 25 genes
NF 0.77
%ile 98.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.20.90PtpAffx.203035.1.S1_atpmrna6011AP2/ERF domain-containing transcription factor-3e-2At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.9499.60.91PtpAffx.9959.1.A1_atBP936055hypothetical protein-1e+0At3g59450calcium-binding EF hand family proteinO.I.H.G.S.X.
0.9097.90.89PtpAffx.8577.2.A1_atCV256116--2e-31At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.8797.50.91PtpAffx.119343.2.A1_a_atBP936124hypothetical protein-4e-6At4g29780unknown proteinO.I.H.G.S.X.
0.8697.40.93PtpAffx.8810.1.S1_atCK096534AP2/ERF domain-containing transcription factor /// AP2/ERF domain-containing transcription factor-2e-34At1g21910AP2 domain-containing transcription factor family proteinO.I.H.G.S.X.
0.8597.20.89PtpAffx.158361.1.S1_atCA822309--1e+0At3g47510unknown proteinO.I.H.G.S.X.
0.8597.20.91PtpAffx.204670.1.S1_atpmrna9194AP2/ERF domain-containing transcription factor-7e-9At1g43160RAP2.6 (related to AP2 6)O.I.H.G.S.X.
0.8597.20.88PtpAffx.93687.1.S1_atBP927882AP2/ERF domain-containing transcription factor-1e+0At1g71450AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.8497.10.90PtpAffx.54562.1.A1_atCV243605AP2/ERF domain-containing transcription factor-8e-31At5g51990CBF4 (C- REPEAT-BINDING FACTOR 4)O.I.H.G.S.X.
0.8397.00.88PtpAffx.215817.1.S1_atpmrna30229AP2/ERF domain-containing transcription factor-8e-7At3g23240ERF1 (ETHYLENE RESPONSE FACTOR 1)O.I.H.G.S.X.
0.8397.00.92PtpAffx.106356.1.S1_atCX660277AP2/ERF domain-containing transcription factor-5e+0At3g15050IQD10 (IQ-domain 10)O.I.H.G.S.X.
0.8196.10.92PtpAffx.30602.1.A1_atCV268363hypothetical protein-1e-4At5g17800AtMYB56 (myb domain protein 56)O.I.H.G.S.X.
0.7995.30.89PtpAffx.221103.1.S1_atpmrna37700--7e-5At2g44840ERF13 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13)O.I.H.G.S.X.
0.7794.90.90PtpAffx.129941.1.S1_s_atCA823700hypothetical protein-7e-10At2g31180MYB14 (MYB DOMAIN PROTEIN 14)O.I.H.G.S.X.
0.7794.90.90PtpAffx.93687.1.S1_s_atBP927882AP2/ERF domain-containing transcription factor-1e+0At1g71450AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.7794.90.90PtpAffx.59348.1.S1_atCA928346hypothetical protein-3e-1At5g08370AtAGAL2 (Arabidopsis thaliana ALPHA-GALACTOSIDASE 2)O.I.H.G.S.X.
0.7694.30.91PtpAffx.35610.1.A1_atCV257792hypothetical protein-1e-13At1g06180ATMYB13 (MYB DOMAIN PROTEIN 13)O.I.H.G.S.X.
0.7393.60.89PtpAffx.204806.1.S1_atpmrna9474hypothetical protein-2e-2At5g12340unknown proteinO.I.H.G.S.X.
0.6891.30.90PtpAffx.106356.1.S1_s_atCX660277AP2/ERF domain-containing transcription factor-9e-2At5g19800hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.6688.70.92Ptp.3396.1.S1_atDN485474hypothetical protein-1e-5At3g50310MAPKKK20O.I.H.G.S.X.
0.6488.40.90Ptp.4398.2.A1_atDN489197hypothetical protein-8e-4At1g14860atnudt18 (Arabidopsis thaliana Nudix hydrolase homolog 18)O.I.H.G.S.X.
0.6488.40.92Ptp.3396.1.S1_s_atDN485474hypothetical protein-1e-5At3g50310MAPKKK20O.I.H.G.S.X.
0.6388.10.92Ptp.7458.1.S1_atBU865438--5e-9At4g27280calcium-binding EF hand family proteinO.I.H.G.S.X.
0.5380.50.89PtpAffx.119343.1.A1_a_atBP933189hypothetical protein-4e-10At5g12010unknown proteinO.I.H.G.S.X.
0.5078.60.91PtpAffx.201811.1.S1_atpmrna3608hypothetical protein-2e-7At5g64660U-box domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.398.5GSM328566Populus x canescens root hypoxia_rep_08GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
8.298.5GSM328483Populus x canescens root control_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
4.095.3GSM327408Populus balsamifera_1006_root_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.987.2GSM362889Clone1979_LPI5_N-_4w_rep1GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
1.785.5GSM327407Populus balsamifera_1006_root_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM328281Populus x canescens root control_rep_02GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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