CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.203.3.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=3e-1)

Module size 32 genes

NF 0.73

%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 96.3 0.90 PtpAffx.203.3.A1_at CV269424 hypothetical protein - 3e-1 At3g50960 PLP3a (Phosducin-like protein 3 homolog) O.I. H.G. S.X.
0.83 97.0 0.93 PtpAffx.25530.1.S1_at CV274786 hypothetical protein - 1e+0 At2g03420 unknown protein O.I. H.G. S.X.
0.82 96.3 0.90 PtpAffx.200435.1.S1_at pmrna874 hypothetical protein - 6e-1 At2g47690 NADH-ubiquinone oxidoreductase-related O.I. H.G. S.X.
0.82 96.3 0.92 PtpAffx.94727.1.A1_at CV274161 - - 3e+0 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.81 96.1 0.91 PtpAffx.209321.1.S1_at pmrna18419 hypothetical protein - 1e-1 At2g37820 DC1 domain-containing protein O.I. H.G. S.X.
0.81 96.1 0.91 PtpAffx.146514.1.A1_at CV274174 - - 1e-6 At1g07770 RPS15A (ribosomal protein s15a) O.I. H.G. S.X.
0.80 96.0 0.90 PtpAffx.50239.1.A1_at CV258028 - - 2e-1 At5g09995 unknown protein O.I. H.G. S.X.
0.80 96.0 0.92 PtpAffx.101192.1.A1_at CV274118 - - 7e+0 At5g05650 - O.I. H.G. S.X.
0.76 94.3 0.92 PtpAffx.114048.1.A1_at CV273506 - - 1e-19 At3g62250 UBQ5 (ubiquitin 5) O.I. H.G. S.X.
0.76 94.3 0.92 PtpAffx.200538.1.S1_at pmrna1071 hypothetical protein - 7e-1 At4g24310 unknown protein O.I. H.G. S.X.
0.75 94.1 0.91 PtpAffx.160721.1.S1_at AJ769720 hypothetical protein - 2e-5 At5g10100 trehalose-6-phosphate phosphatase, putative O.I. H.G. S.X.
0.75 94.1 0.90 Ptp.3680.1.S1_at CV244042 - - 2e-2 At4g31380 FLP1 (FPF1-LIKE PROTEIN 1) O.I. H.G. S.X.
0.75 94.1 0.91 PtpAffx.15038.1.A1_a_at CV266349 - - 4e+0 At3g43290 unknown protein O.I. H.G. S.X.
0.74 93.8 0.90 PtpAffx.213177.1.S1_s_at pmrna25777 hypothetical protein - 9e-1 At5g57760 unknown protein O.I. H.G. S.X.
0.74 93.8 0.91 PtpAffx.200319.1.S1_at pmrna634 aminophospholipid ATPase - 3e-14 At1g17500 ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism O.I. H.G. S.X.
0.73 93.6 0.88 PtpAffx.30032.2.S1_at CX177019 - - 3e-4 At4g38470 protein kinase family protein O.I. H.G. S.X.
0.73 93.6 0.88 PtpAffx.225112.1.S1_at pmrna44216 hypothetical protein - 1e-6 At5g59810 SBT5.4 O.I. H.G. S.X.
0.73 93.6 0.91 PtpAffx.145218.1.A1_at BP936462 hypothetical protein - 2e-3 At5g01330 PDC3 (pyruvate decarboxylase-3) O.I. H.G. S.X.
0.72 92.7 0.92 PtpAffx.224340.1.S1_at pmrna42800 hypothetical protein - 1e-14 At4g08780 peroxidase, putative O.I. H.G. S.X.
0.71 92.6 0.89 PtpAffx.224720.1.S1_s_at pmrna43532 hypothetical protein - 2e-5 At1g11330 S-locus lectin protein kinase family protein O.I. H.G. S.X.
0.70 91.7 0.91 PtpAffx.213177.1.S1_at pmrna25777 hypothetical protein - 9e-1 At5g57760 unknown protein O.I. H.G. S.X.
0.68 91.3 0.90 PtpAffx.158313.1.A1_at BP930507 - - 4e+0 At5g23130 peptidoglycan-binding LysM domain-containing protein O.I. H.G. S.X.
0.68 91.3 0.90 PtpAffx.19956.2.S1_at CV251106 - - 1e-28 At4g39770 trehalose-6-phosphate phosphatase, putative O.I. H.G. S.X.
0.68 91.3 0.93 PtpAffx.201195.1.S1_at pmrna2363 hypothetical protein - 8e-6 At2g17150 RWP-RK domain-containing protein O.I. H.G. S.X.
0.67 91.1 0.90 PtpAffx.14147.1.S1_at CV244771 - - 4e-1 At3g26310 CYP71B35 O.I. H.G. S.X.
0.65 88.6 0.91 PtpAffx.204737.1.S1_at pmrna9323 hypothetical protein - 2e-14 At2g17150 RWP-RK domain-containing protein O.I. H.G. S.X.
0.64 88.4 0.91 PtpAffx.14188.1.A1_at CV275407 hypothetical protein - 2e-5 At2g21045 - O.I. H.G. S.X.
0.64 88.4 0.91 PtpAffx.210053.1.S1_x_at pmrna19804 hypothetical protein - 1e-53 At5g54840 SGP1 O.I. H.G. S.X.
0.64 88.4 0.86 PtpAffx.69205.1.A1_at CV266595 hypothetical protein - 2e+0 At1g50575 lysine decarboxylase family protein O.I. H.G. S.X.
0.59 84.9 0.91 PtpAffx.203277.1.S1_at pmrna6496 hypothetical protein - 1e-3 At1g64160 disease resistance-responsive family protein / dirigent family protein O.I. H.G. S.X.
0.57 84.2 0.90 PtpAffx.4337.4.A1_at BU877213 hypothetical protein - 2e-5 At4g27450 unknown protein O.I. H.G. S.X.
0.51 78.9 0.92 PtpAffx.202990.1.S1_at pmrna5917 hypothetical protein - 6e-4 At1g53940 GLIP2 O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.82	96.3	0.90	PtpAffx.203.3.A1_at	CV269424	hypothetical protein	-	3e-1	At3g50960	PLP3a (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.
0.83	97.0	0.93	PtpAffx.25530.1.S1_at	CV274786	hypothetical protein	-	1e+0	At2g03420	unknown protein	O.I.	H.G.	S.X.
0.82	96.3	0.90	PtpAffx.200435.1.S1_at	pmrna874	hypothetical protein	-	6e-1	At2g47690	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.
0.82	96.3	0.92	PtpAffx.94727.1.A1_at	CV274161	-	-	3e+0	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.
0.81	96.1	0.91	PtpAffx.209321.1.S1_at	pmrna18419	hypothetical protein	-	1e-1	At2g37820	DC1 domain-containing protein	O.I.	H.G.	S.X.
0.81	96.1	0.91	PtpAffx.146514.1.A1_at	CV274174	-	-	1e-6	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.
0.80	96.0	0.90	PtpAffx.50239.1.A1_at	CV258028	-	-	2e-1	At5g09995	unknown protein	O.I.	H.G.	S.X.
0.80	96.0	0.92	PtpAffx.101192.1.A1_at	CV274118	-	-	7e+0	At5g05650	-	O.I.	H.G.	S.X.
0.76	94.3	0.92	PtpAffx.114048.1.A1_at	CV273506	-	-	1e-19	At3g62250	UBQ5 (ubiquitin 5)	O.I.	H.G.	S.X.
0.76	94.3	0.92	PtpAffx.200538.1.S1_at	pmrna1071	hypothetical protein	-	7e-1	At4g24310	unknown protein	O.I.	H.G.	S.X.
0.75	94.1	0.91	PtpAffx.160721.1.S1_at	AJ769720	hypothetical protein	-	2e-5	At5g10100	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.
0.75	94.1	0.90	Ptp.3680.1.S1_at	CV244042	-	-	2e-2	At4g31380	FLP1 (FPF1-LIKE PROTEIN 1)	O.I.	H.G.	S.X.
0.75	94.1	0.91	PtpAffx.15038.1.A1_a_at	CV266349	-	-	4e+0	At3g43290	unknown protein	O.I.	H.G.	S.X.
0.74	93.8	0.90	PtpAffx.213177.1.S1_s_at	pmrna25777	hypothetical protein	-	9e-1	At5g57760	unknown protein	O.I.	H.G.	S.X.
0.74	93.8	0.91	PtpAffx.200319.1.S1_at	pmrna634	aminophospholipid ATPase	-	3e-14	At1g17500	ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism	O.I.	H.G.	S.X.
0.73	93.6	0.88	PtpAffx.30032.2.S1_at	CX177019	-	-	3e-4	At4g38470	protein kinase family protein	O.I.	H.G.	S.X.
0.73	93.6	0.88	PtpAffx.225112.1.S1_at	pmrna44216	hypothetical protein	-	1e-6	At5g59810	SBT5.4	O.I.	H.G.	S.X.
0.73	93.6	0.91	PtpAffx.145218.1.A1_at	BP936462	hypothetical protein	-	2e-3	At5g01330	PDC3 (pyruvate decarboxylase-3)	O.I.	H.G.	S.X.
0.72	92.7	0.92	PtpAffx.224340.1.S1_at	pmrna42800	hypothetical protein	-	1e-14	At4g08780	peroxidase, putative	O.I.	H.G.	S.X.
0.71	92.6	0.89	PtpAffx.224720.1.S1_s_at	pmrna43532	hypothetical protein	-	2e-5	At1g11330	S-locus lectin protein kinase family protein	O.I.	H.G.	S.X.
0.70	91.7	0.91	PtpAffx.213177.1.S1_at	pmrna25777	hypothetical protein	-	9e-1	At5g57760	unknown protein	O.I.	H.G.	S.X.
0.68	91.3	0.90	PtpAffx.158313.1.A1_at	BP930507	-	-	4e+0	At5g23130	peptidoglycan-binding LysM domain-containing protein	O.I.	H.G.	S.X.
0.68	91.3	0.90	PtpAffx.19956.2.S1_at	CV251106	-	-	1e-28	At4g39770	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.
0.68	91.3	0.93	PtpAffx.201195.1.S1_at	pmrna2363	hypothetical protein	-	8e-6	At2g17150	RWP-RK domain-containing protein	O.I.	H.G.	S.X.
0.67	91.1	0.90	PtpAffx.14147.1.S1_at	CV244771	-	-	4e-1	At3g26310	CYP71B35	O.I.	H.G.	S.X.
0.65	88.6	0.91	PtpAffx.204737.1.S1_at	pmrna9323	hypothetical protein	-	2e-14	At2g17150	RWP-RK domain-containing protein	O.I.	H.G.	S.X.
0.64	88.4	0.91	PtpAffx.14188.1.A1_at	CV275407	hypothetical protein	-	2e-5	At2g21045	-	O.I.	H.G.	S.X.
0.64	88.4	0.91	PtpAffx.210053.1.S1_x_at	pmrna19804	hypothetical protein	-	1e-53	At5g54840	SGP1	O.I.	H.G.	S.X.
0.64	88.4	0.86	PtpAffx.69205.1.A1_at	CV266595	hypothetical protein	-	2e+0	At1g50575	lysine decarboxylase family protein	O.I.	H.G.	S.X.
0.59	84.9	0.91	PtpAffx.203277.1.S1_at	pmrna6496	hypothetical protein	-	1e-3	At1g64160	disease resistance-responsive family protein / dirigent family protein	O.I.	H.G.	S.X.
0.57	84.2	0.90	PtpAffx.4337.4.A1_at	BU877213	hypothetical protein	-	2e-5	At4g27450	unknown protein	O.I.	H.G.	S.X.
0.51	78.9	0.92	PtpAffx.202990.1.S1_at	pmrna5917	hypothetical protein	-	6e-4	At1g53940	GLIP2	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.6 98.9 GSM136936 Poplar in 1 x hrp + 0.25 % sucrose no bacteria GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3 95.8 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
3.7 94.7 GSM136938 Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose GSE5887 Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8 92.1 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.1 88.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
1.9 87.2 GSM334226 Populus balsamifera_1006_mature_leaf_midday_3 GSE13990 Populus balsamifera developmental tissue series
1.8 86.4 GSM328484 Populus x canescens root hypoxia_rep_01 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328533 Populus x canescens root hypoxia_rep_03 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.8 86.4 GSM328532 Populus x canescens root hypoxia_rep_02 GSE13109 Effect of hypoxia on gene expression in Grey poplar
1.5 83.5 GSM327409 Populus balsamifera_1006_root_midday_3 GSE13990 Populus balsamifera developmental tissue series

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.6	98.9	GSM136936	Poplar in 1 x hrp + 0.25 % sucrose no bacteria	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
4.3	95.8	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.7	94.7	GSM136938	Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucrose	GSE5887	Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphere
2.8	92.1	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM334226	Populus balsamifera_1006_mature_leaf_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328533	Populus x canescens root hypoxia_rep_03	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.8	86.4	GSM328532	Populus x canescens root hypoxia_rep_02	GSE13109	Effect of hypoxia on gene expression in Grey poplar
1.5	83.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	PtpAffx.203.3.A1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=3e-1)
Module size	32 genes
NF	0.73
%ile	97.1

Co-expression analysis

Gene ID PtpAffx.203.3.A1_at Gene name hypothetical protein Homology with ArabidopsisSimilar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=3e-1) Module size 32 genes NF 0.73 %ile 97.1

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaTriticum_aestivumVitis_viniferaZea_mays

Gene ID PtpAffx.203.3.A1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At3g50960: PLP3a (Phosducin-like protein 3 homolog) (HF=3e-1)

Module size 32 genes

NF 0.73

%ile 97.1

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays