Co-expression analysis

Gene ID PtpAffx.202991.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At3g04510: LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) (HF=6e-1)
Module size 6 genes
NF 0.35
%ile 60.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5582.20.90PtpAffx.202991.1.S1_atpmrna5919hypothetical protein-6e-1At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.6187.00.90PtpAffx.207643.1.S1_atpmrna15162hypothetical protein-3e-1At3g57390AGL18O.I.H.G.S.X.
0.3357.50.90PtpAffx.212939.1.S1_atpmrna25319hypothetical protein-2e-8At5g07380unknown proteinO.I.H.G.S.X.
0.2850.50.88PtpAffx.220669.1.S1_atpmrna37079hypothetical protein-4e+1At5g51910TCP family transcription factor, putativeO.I.H.G.S.X.
0.2543.60.89PtpAffx.27724.1.S1_atBU873611--2e-1At1g03140splicing factor Prp18 family proteinO.I.H.G.S.X.
0.1729.10.89PtpAffx.221656.1.S1_atpmrna38651hypothetical protein-3e-4At3g17950unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.399.5GSM136936Poplar in 1 x hrp + 0.25 % sucrose no bacteriaGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
13.599.4GSM136938Poplar contacted with P. aeruginosa PAO1 in 1 x hrp + 0.25 % sucroseGSE5887Pseudomonas aeruginosa PAO1 virulent genes in the poplar rhizosphereLink to GEO
5.196.8GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.395.8GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.794.7GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.992.5GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.892.1GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.785.5GSM327413Populus balsamifera_1006_differentiating_xylem_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.684.5GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
1.583.5GSM244440Mixed infected tissue, biological rep2GSE9673Comparative transcriptomic reveals signatures specific to various interactions with Melampsora rust fungiLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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