Co-expression analysis

Gene ID	PtpAffx.202924.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At3g10880: unknown protein (HF=2e+0)
Module size	20 genes
NF	0.31
%ile	55.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	91.1	0.90	PtpAffx.202924.1.S1_at	pmrna5786	hypothetical protein	-	2e+0	At3g10880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.49	75.7	0.95	Ptp.1492.1.S1_s_at	CV271929	hypothetical protein	-	4e-33	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.93	PtpAffx.205970.1.S1_at	pmrna11840	hypothetical protein	-	8e-1	At5g09750	HEC3 (HECATE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.5733.1.S1_s_at	AJ777863	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	0.96	Ptp.5733.1.S1_at	AJ777863	-	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.21710.1.S1_x_at	CV230014	hypothetical protein	-	8e-120	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	0.96	PtpAffx.249.859.A1_at	CV276451	-	-	4e-43	At5g03240	UBQ3 (POLYUBIQUITIN 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.39	64.6	0.97	Ptp.8000.1.S1_at	DN484105	hypothetical protein	-	0	Atmg01190	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.93	PtpAffx.9962.1.S1_a_at	CV244590	hypothetical protein	-	3e+0	At4g18580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	0.93	PtpAffx.134328.1.A1_at	CV239401	hypothetical protein	-	6e+0	At5g28410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	0.95	Ptp.514.1.A1_s_at	CV258507	hypothetical protein	-	2e-18	At2g20360	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.93	PtpAffx.17258.1.A1_at	CV269729	hypothetical protein	-	7e-10	At3g52350	D111/G-patch domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	0.95	Ptp.6423.1.S1_s_at	CV227334	hypothetical protein /// mitochondrial beta subunit of F1 ATP synthase	-	0	At5g08670	ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	0.92	PtpAffx.5021.1.S1_at	CK090757	hypothetical protein	-	1e-4	At1g54360	TAF6B4 (TBP-ASSOCIATED FACTOR 6B4)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.93	PtpAffx.5430.3.S1_a_at	CV242643	hypothetical protein	-	1e-112	At1g19910	AVA-P2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.95	Ptp.4499.1.S1_at	CN519933	hypothetical protein	-	3e-8	At5g55640	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.94	PtpAffx.454.1.A1_a_at	CV247213	-	-	6e-4	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.93	Ptp.1439.1.S1_x_at	CA826378	hypothetical protein	-	3e-1	At3g06120	MUTE (MUTE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	0.95	PtpAffx.2152.1.S1_s_at	CV254452	hypothetical protein	-	5e-5	At3g13410	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	0.94	Ptp.2388.1.A1_s_at	CV241230	hypothetical protein	-	2e-6	At4g26410	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	91.3	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM372043	Clone1979_LPI5_N-_8w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM327409	Populus balsamifera_1006_root_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.6	84.5	GSM362886	Clone1979_LPI2_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
1.6	84.5	GSM328484	Populus x canescens root hypoxia_rep_01	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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