Co-expression analysis

Gene ID	PtpAffx.202912.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At5g25460: unknown protein (HF=6e-4)
Module size	6 genes
NF	0.73
%ile	97.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	0.93	PtpAffx.202912.1.S1_at	pmrna5768	hypothetical protein	-	6e-4	At5g25460	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	0.93	PtpAffx.209366.1.S1_at	pmrna18547	white-brown-complex ABC transporter family	-	1e-18	At2g39350	ABC transporter family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	0.93	PtpAffx.210399.1.S1_at	pmrna20438	hypothetical protein	-	5e-18	At1g73680	pathogen-responsive alpha-dioxygenase, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.71	92.6	0.93	PtpAffx.204494.1.S1_at	pmrna8820	hypothetical protein	-	3e-69	At4g35190	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	0.92	PtpAffx.30927.1.A1_at	CV255942	hypothetical protein	-	2e+0	At5g59470	PQ-loop repeat family protein / transmembrane family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	0.94	Ptp.6783.1.S1_at	DN488831	hypothetical protein	-	1e-5	At5g62610	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.3	95.8	GSM327658	Populus balsamifera_Female_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
4.0	95.3	GSM327397	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_2	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM327408	Populus balsamifera_1006_root_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM372089	Clone3200_LPI2_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.2	89.3	GSM327398	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_3	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327380	Populus balsamifera_20071015_Etiolated_seedling_6d_transfered_to_light_3h_1	GSE13990	Populus balsamifera developmental tissue series
2.1	88.6	GSM327407	Populus balsamifera_1006_root_midday_1	GSE13990	Populus balsamifera developmental tissue series
1.9	87.2	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
1.8	86.4	GSM372093	Clone3200_LPI5_N+_4w_rep1	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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