Co-expression analysis

Gene ID	PtpAffx.20264.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g51160: synbindin, putative (HF=2e+0)
Module size	8 genes
NF	0.28
%ile	50.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.88	PtpAffx.20264.1.S1_at	CK103709	-	-	2e+0	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.47	74.6	0.88	PtpAffx.220053.1.S1_at	pmrna36328	hypothetical protein	-	6e-1	At1g69526	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.87	PtpAffx.131207.1.S1_at	CK095473	-	-	1e+0	At4g21020	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	0.88	PtpAffx.20441.1.A1_at	CV232484	-	-	2e-1	At5g22040	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.212946.1.S1_at	pmrna25335	hypothetical protein	-	1e+0	At1g48745	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	0.88	PtpAffx.63346.1.A1_at	CV243969	-	-	2e-2	At1g10150	carbohydrate binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	0.88	PtpAffx.98474.1.S1_at	DN497266	-	-	8e-2	At5g56400	F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	0.88	PtpAffx.95569.1.A1_at	CV241413	-	-	1e-3	At5g64880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.5	96.1	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
3.3	93.7	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
3.1	93.2	GSM327657	Populus balsamifera_Female_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.9	92.5	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.5	90.9	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.4	90.4	GSM372098	Clone3200_LPI5_N-_8w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.4	90.4	GSM327656	Populus balsamifera_Female_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.3	89.8	GSM362889	Clone1979_LPI5_N-_4w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM372042	Clone1979_LPI5_N-_8w_rep1	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328077	Populus x canescens leaf control_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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