CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID PtpAffx.202603.1.S1_at

Gene name hypothetical protein
Homology with Arabidopsis Similar to At2g04080: MATE efflux family protein (HF=1e-8)

Module size 6 genes

NF 0.03

%ile 6.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 0.89 PtpAffx.202603.1.S1_at pmrna5211 hypothetical protein - 1e-8 At2g04080 MATE efflux family protein O.I. H.G. S.X.
0.04 6.9 0.89 PtpAffx.25959.1.S1_at DN498122 hypothetical protein - 2e+0 At5g20160 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein O.I. H.G. S.X.
0.04 6.9 0.89 Ptp.6795.1.S1_at DN489696 hypothetical protein - 5e-7 At1g75310 AUL1 O.I. H.G. S.X.
0.03 5.2 0.90 PtpAffx.211936.1.S1_x_at pmrna23439 hypothetical protein - 3e-38 At2g04350 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) O.I. H.G. S.X.
0.01 2.2 0.89 PtpAffx.17660.2.S1_s_at CV233145 hypothetical protein - 1e-7 At2g23780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.01 2.2 0.90 PtpAffx.37459.1.S1_at CK090406 hypothetical protein - 3e-59 At2g30590 WRKY21 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.8 98.0 GSM327661 Populus balsamifera_Male_Catkin_midday_3 GSE13990 Populus balsamifera developmental tissue series
6.1 97.6 GSM327660 Populus balsamifera_Male_Catkin_midday_2 GSE13990 Populus balsamifera developmental tissue series
2.6 91.3 GSM372090 Clone3200_LPI2_N+_4w_rep2 GSE14893 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6 91.3 GSM327404 Populus balsamifera_1006_young_leaf_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.4 90.4 GSM328562 Populus x canescens root hypoxia_rep_04 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.4 90.4 GSM362888 Clone1979_LPI5_N+_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2 89.3 GSM328567 Populus x canescens root hypoxia_rep_09 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.1 88.6 GSM328564 Populus x canescens root hypoxia_rep_06 GSE13109 Effect of hypoxia on gene expression in Grey poplar
2.0 88.0 GSM327659 Populus balsamifera_Male_Catkin_midday_1 GSE13990 Populus balsamifera developmental tissue series
2.0 88.0 GSM362890 Clone1979_LPI5_N-_4w_rep2 GSE14515 Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.122371.1.S1_x_at, orthologous to the query gene, PtpAffx.202603.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.122371.1.S1_x_at At2g04080 - - 2e-1 At1g27400 60S ribosomal protein L17 (RPL17A) O.I. H.G. S.X.
0.29 39.2 TaAffx.111909.1.S1_at At2g04080 - - 2e+1 At5g09250 KIWI O.I. H.G. S.X.
0.08 9.4 Ta.6062.3.S1_at At2g04080 - - 1e-3 At4g24590 unknown protein O.I. H.G. S.X.
0.06 7.6 Ta.3911.2.S1_s_at At2g04080 - - 4e+0 At2g44290 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) O.I. H.G. S.X.
0.04 5.8 TaAffx.118620.1.S1_at At2g04080 - - 1e+0 At2g31560 unknown protein O.I. H.G. S.X.
0.01 2.4 Ta.9630.2.S1_at At2g04080 - - 2e-1 At1g80160 lactoylglutathione lyase family protein / glyoxalase I family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Vitis_vinifera
Zea_mays

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