Co-expression analysis

Gene ID PtpAffx.202603.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g04080: MATE efflux family protein (HF=1e-8)
Module size 6 genes
NF 0.03
%ile 6.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.89PtpAffx.202603.1.S1_atpmrna5211hypothetical protein-1e-8At2g04080MATE efflux family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.25959.1.S1_atDN498122hypothetical protein-2e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.046.90.89Ptp.6795.1.S1_atDN489696hypothetical protein-5e-7At1g75310AUL1O.I.H.G.S.X.
0.035.20.90PtpAffx.211936.1.S1_x_atpmrna23439hypothetical protein-3e-38At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)O.I.H.G.S.X.
0.012.20.89PtpAffx.17660.2.S1_s_atCV233145hypothetical protein-1e-7At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.012.20.90PtpAffx.37459.1.S1_atCK090406hypothetical protein-3e-59At2g30590WRKY21O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.197.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os.41694.1.S1_at, orthologous to the query gene, PtpAffx.202603.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays



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