Co-expression analysis

Gene ID	PtpAffx.202603.1.S1_at
Gene name	hypothetical protein
Homology with Arabidopsis	Similar to At2g04080: MATE efflux family protein (HF=1e-8)
Module size	6 genes
NF	0.03
%ile	6.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	78.6	0.89	PtpAffx.202603.1.S1_at	pmrna5211	hypothetical protein	-	1e-8	At2g04080	MATE efflux family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	PtpAffx.25959.1.S1_at	DN498122	hypothetical protein	-	2e+0	At5g20160	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	0.89	Ptp.6795.1.S1_at	DN489696	hypothetical protein	-	5e-7	At1g75310	AUL1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	0.90	PtpAffx.211936.1.S1_x_at	pmrna23439	hypothetical protein	-	3e-38	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.89	PtpAffx.17660.2.S1_s_at	CV233145	hypothetical protein	-	1e-7	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.01	2.2	0.90	PtpAffx.37459.1.S1_at	CK090406	hypothetical protein	-	3e-59	At2g30590	WRKY21	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.8	98.0	GSM327661	Populus balsamifera_Male_Catkin_midday_3	GSE13990	Populus balsamifera developmental tissue series
6.1	97.6	GSM327660	Populus balsamifera_Male_Catkin_midday_2	GSE13990	Populus balsamifera developmental tissue series
2.6	91.3	GSM372090	Clone3200_LPI2_N+_4w_rep2	GSE14893	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200
2.6	91.3	GSM327404	Populus balsamifera_1006_young_leaf_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.4	90.4	GSM328562	Populus x canescens root hypoxia_rep_04	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.4	90.4	GSM362888	Clone1979_LPI5_N+_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979
2.2	89.3	GSM328567	Populus x canescens root hypoxia_rep_09	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.1	88.6	GSM328564	Populus x canescens root hypoxia_rep_06	GSE13109	Effect of hypoxia on gene expression in Grey poplar
2.0	88.0	GSM327659	Populus balsamifera_Male_Catkin_midday_1	GSE13990	Populus balsamifera developmental tissue series
2.0	88.0	GSM362890	Clone1979_LPI5_N-_4w_rep2	GSE14515	Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979

Inter-species module comparison

A co-expression module including the barley gene, Contig24208_at, orthologous to the query gene, PtpAffx.202603.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig24208_at	At2g04080	-	-	1e+0	At3g23390	60S ribosomal protein L36a/L44 (RPL36aA)	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig18720_at	At2g04080	-	-	8e-5	At4g36690	ATU2AF65A	O.I.	H.G.	S.X.	Please select
0.91	98.1	Contig22228_at	At2g04080	-	-	1e-1	At5g24310	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.91	98.1	HM02G15u_at	At2g04080	-	-	7e-2	At1g07070	60S ribosomal protein L35a (RPL35aA)	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig17386_at	At2g04080	-	-	2e+0	At4g04423	endo-1,3(4)-beta-glucanase	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig19445_at	At2g04080	-	-	8e-3	At4g31110	kinase	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage