Co-expression analysis

Gene ID PtpAffx.202603.1.S1_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At2g04080: MATE efflux family protein (HF=1e-8)
Module size 6 genes
NF 0.03
%ile 6.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5078.60.89PtpAffx.202603.1.S1_atpmrna5211hypothetical protein-1e-8At2g04080MATE efflux family proteinO.I.H.G.S.X.
0.046.90.89PtpAffx.25959.1.S1_atDN498122hypothetical protein-2e+0At5g20160ribosomal protein L7Ae/L30e/S12e/Gadd45 family proteinO.I.H.G.S.X.
0.046.90.89Ptp.6795.1.S1_atDN489696hypothetical protein-5e-7At1g75310AUL1O.I.H.G.S.X.
0.035.20.90PtpAffx.211936.1.S1_x_atpmrna23439hypothetical protein-3e-38At2g04350long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)O.I.H.G.S.X.
0.012.20.89PtpAffx.17660.2.S1_s_atCV233145hypothetical protein-1e-7At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.012.20.90PtpAffx.37459.1.S1_atCK090406hypothetical protein-3e-59At2g30590WRKY21O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.898.0GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
6.197.6GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.691.3GSM372090Clone3200_LPI2_N+_4w_rep2GSE14893Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 3200Link to GEO
2.691.3GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.490.4GSM328562Populus x canescens root hypoxia_rep_04GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.490.4GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
2.289.3GSM328567Populus x canescens root hypoxia_rep_09GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.188.6GSM328564Populus x canescens root hypoxia_rep_06GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO
2.088.0GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.088.0GSM362890Clone1979_LPI5_N-_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.27474.1.S1_at, orthologous to the query gene, PtpAffx.202603.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8392.5GmaAffx.27474.1.S1_atAt2g04080--1e-4At1g71140MATE efflux family proteinO.I.H.G.S.X.
0.6786.1GmaAffx.88920.1.S1_s_atAt2g04080--3e-60At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.6583.8GmaAffx.93265.1.S1_atAt2g04080aspartate aminotransferase glyoxysomal isozyme AAT1 precursor-2e-27At5g19550ASP2 (ASPARTATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.6080.7GmaAffx.55342.1.S1_atAt2g04080--5e-3At1g65560allyl alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.5979.5GmaAffx.93265.1.S1_s_atAt2g04080aspartate aminotransferase glyoxysomal isozyme AAT1 precursor-2e-27At5g19550ASP2 (ASPARTATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.5778.8Gma.4395.2.S1_s_atAt2g04080--3e+0At5g66053unknown proteinO.I.H.G.S.X.
0.5678.2GmaAffx.90396.1.S1_s_atAt2g04080--4e-53At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.5678.2GmaAffx.77900.1.S1_s_atAt2g04080--4e-37At5g50850MAB1 (MACCI-BOU)O.I.H.G.S.X.
0.5576.3GmaAffx.23827.1.S1_atAt2g04080--3e-10At3g60100CSY5 (citrate synthase 5)O.I.H.G.S.X.
0.5273.1Gma.3139.1.S1_s_atAt2g04080aspartate aminotransferase glyoxysomal isozyme AAT1 precursor-4e-43At5g19550ASP2 (ASPARTATE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.5172.3GmaAffx.73273.2.S1_s_atAt2g04080--2e-2At4g24380unknown proteinO.I.H.G.S.X.
0.4867.7GmaAffx.86851.1.S1_atAt2g04080--3e-16At5g60790ATGCN1O.I.H.G.S.X.
0.4867.7GmaAffx.91491.1.S1_s_atAt2g04080--7e-20At3g08580AAC1 (ADP/ATP CARRIER 1)O.I.H.G.S.X.
0.4867.7GmaAffx.67134.1.S1_atAt2g04080--2e-2At3g13930dihydrolipoamide S-acetyltransferase, putativeO.I.H.G.S.X.
0.4563.9GmaAffx.86175.2.S1_atAt2g04080--2e-2At1g09490cinnamyl-alcohol dehydrogenase family / CAD familyO.I.H.G.S.X.
0.4259.3GmaAffx.91821.1.S1_s_atAt2g04080--7e-12At1g80360aminotransferase class I and II family proteinO.I.H.G.S.X.
0.3853.3Gma.5649.3.S1_a_atAt2g04080protein disufide isomerase-like protein /// protein disulfide isomerase-like protein-7e-20At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)O.I.H.G.S.X.
0.3751.7GmaAffx.72812.1.S1_atAt2g04080--4e+0At4g25080CHLM (magnesium-protoporphyrin IX methyltransferase)O.I.H.G.S.X.
0.3548.6GmaAffx.93250.1.S1_atAt2g04080--5e-49At5g49460ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)O.I.H.G.S.X.
0.3447.2GmaAffx.86528.1.S1_atAt2g04080--2e-5At5g59480haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.3346.1GmaAffx.68141.1.S1_atAt2g04080--1e-13At2g19860HXK2 (HEXOKINASE 2)O.I.H.G.S.X.
0.3243.7GmaAffx.91826.1.S1_s_atAt2g04080--4e-53At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.
0.3142.2GmaAffx.93557.1.S1_s_atAt2g04080Enolase-2e-74At2g36530LOS2O.I.H.G.S.X.
0.3142.2Gma.7690.2.S1_s_atAt2g04080alanine aminotransferase 1-2e-81At1g72330ALAAT2 (ALANINE AMINOTRANSFERASE 2)O.I.H.G.S.X.
0.2735.7Gma.6019.2.S1_atAt2g04080--6e-11At2g20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeO.I.H.G.S.X.
0.2633.9GmaAffx.90459.1.A1_s_atAt2g04080--1e-28At1g097802,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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