Co-expression analysis

Gene ID PtpAffx.20260.2.S1_a_at
Gene name hypothetical protein
Homology with ArabidopsisSimilar to At4g22190: unknown protein (HF=1e-3)
Module size 6 genes
NF 0.42
%ile 70.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6791.10.95PtpAffx.20260.2.S1_a_atCV257316hypothetical protein-1e-3At4g22190unknown proteinO.I.H.G.S.X.
0.6187.00.95PtpAffx.13792.2.S1_atCV283738hypothetical protein-7e-14At4g10610CID12O.I.H.G.S.X.
0.6187.00.95PtpAffx.11623.1.A1_atCV260515hypothetical protein-8e-25At5g09850transcription elongation factor-relatedO.I.H.G.S.X.
0.3661.60.95Ptp.3673.1.S1_s_atCK096543hypothetical protein-6e-1At4g00355unknown proteinO.I.H.G.S.X.
0.2340.50.96Ptp.333.1.S1_atCK088426hypothetical protein-6e-7At4g12040zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.2136.50.95PtpAffx.7711.1.A1_s_atCN520343hypothetical protein-5e-10At2g20840secretory carrier membrane protein (SCAMP) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.195.5GSM327657Populus balsamifera_Female_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
4.195.5GSM327661Populus balsamifera_Male_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.995.1GSM327659Populus balsamifera_Male_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.694.5GSM362888Clone1979_LPI5_N+_4w_rep2GSE14515Comparative transcriptomics analysis of Populus leaves under nitrogen limitation: clone 1979Link to GEO
3.594.3GSM327656Populus balsamifera_Female_Catkin_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.193.2GSM327660Populus balsamifera_Male_Catkin_midday_2GSE13990Populus balsamifera developmental tissue seriesLink to GEO
3.092.9GSM327411Populus balsamifera_1006_differentiating_xylem_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.791.8GSM327404Populus balsamifera_1006_young_leaf_midday_1GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.389.8GSM327658Populus balsamifera_Female_Catkin_midday_3GSE13990Populus balsamifera developmental tissue seriesLink to GEO
2.188.6GSM328284Populus x canescens root control_rep_03GSE13109Effect of hypoxia on gene expression in Grey poplarLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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